10-Q 1 d707953d10q.htm FORM 10-Q

##### Table of Contents

UNITED STATES

SECURITIES AND EXCHANGE COMMISSION

Washington, D.C. 20549

FORM 10-Q

(Mark One)

x | QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

For the quarterly period ended March 29, 2014

or

¨ | TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

For the transition period from to

Commission File Number: 1-36214

Hologic, Inc.

(Exact name of registrant as specified in its charter)

Delaware |  | 04-2902449
(State of incorporation) |  | (I.R.S. Employer Identification No.)
35 Crosby Drive, Bedford, Massachusetts |  | 01730
(Address of principal executive offices) |  | (Zip Code)

(781) 999-7300

(Registrant’s telephone number, including area code)

Indicate by check mark whether the registrant: (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days. Yes x No ¨

Indicate by check mark whether the registrant has submitted electronically and posted on its corporate Web site, if any, every Interactive Data File required to be submitted and posted pursuant to Rule 405 of Regulation S-T (§232.405 of this chapter) during the preceding 12 months (or for such shorter period that the registrant was required to submit and post such files). Yes x No ¨

Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer, or a smaller reporting company. See the definitions of “large accelerated filer,” “accelerated filer” and “smaller reporting company” in Rule 12b-2 of the Exchange Act. (Check One):

Large accelerated filer |  | x |  | Accelerated filer |  | ¨
Non-accelerated filer |  | ¨ (Do not check if a smaller reporting company) |  | Smaller reporting company |  | ¨

Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Exchange Act.) Yes ¨ No x

As of April 28, 2014, 276,320,003 shares of the registrant’s Common Stock, $0.01 par value, were outstanding.

##### Table of Contents

HOLOGIC, INC.

INDEX

|  | Page |
PART I – FINANCIAL INFORMATION |  |  |  |
Item 1. Financial Statements (unaudited) |  |  |  |
Consolidated Statements of Operations for the Three and Six Months Ended March 29, 2014 and March 30, 2013 |  |  | 3 |
Consolidated Statements of Comprehensive Loss for the Three and Six Months Ended March 29, 2014 and March 30, 2013 |  |  | 4 |
Consolidated Balance Sheets as of March 29, 2014 and September 28, 2013 |  |  | 5 |
Consolidated Statements of Cash Flows for the Six Months Ended March 29, 2014 and March 30, 2013 |  |  | 6 |
Notes to Consolidated Financial Statements |  |  | 7 |
Item 2. Management’s Discussion and Analysis of Financial Condition and Results of Operations |  |  | 31 |
Item 3. Quantitative and Qualitative Disclosures About Market Risk |  |  | 45 |
Item 4. Controls and Procedures |  |  | 46 |
PART II – OTHER INFORMATION |  |  | 46 |
Item 1. |  | Legal Proceedings |  |  | 46 |
Item 1A. |  | Risk Factors |  |  | 46 |
Item 2. |  | Unregistered Sales of Equity Securities and Use of Proceeds |  |  | 47 |
Item 5. |  | Other Information |  |  | 47 |
Item 6. |  | Exhibits |  |  | 48 |
SIGNATURES |  |  | 49 |
EXHIBITS |  |  |  |

2

##### Table of Contents

PART I – FINANCIAL INFORMATION

Item 1. | Financial Statements (unaudited)

HOLOGIC, INC.

CONSOLIDATED STATEMENTS OF OPERATIONS

(Unaudited)

(In thousands, except per share data)

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | March 29, 2014 |  |  | March 30, 2013 |
Revenues: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Product |  | $ | 521,135 |  |  | $ | 516,116 |  |  | $ | 1,033,517 |  |  | $ | 1,049,370 |
Service and other |  |  | 103,873 |  |  |  | 96,547 |  |  |  | 203,939 |  |  |  | 194,655 |
|  |  | 625,008 |  |  |  | 612,663 |  |  |  | 1,237,456 |  |  |  | 1,244,025 |
Costs of revenues: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Product |  |  | 185,724 |  |  |  | 207,227 |  |  |  | 362,602 |  |  |  | 429,554 |
Amortization of intangible assets |  |  | 76,883 |  |  |  | 75,733 |  |  |  | 153,549 |  |  |  | 151,020 |
Impairment of intangible assets |  |  | 26,567 |  |  |  | — |  |  |  | 26,567 |  |  |  | — |
Service and other |  |  | 53,722 |  |  |  | 50,377 |  |  |  | 107,030 |  |  |  | 102,452 |
Gross Profit |  |  | 282,112 |  |  |  | 279,326 |  |  |  | 587,708 |  |  |  | 560,999 |
Operating expenses: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Research and development |  |  | 49,915 |  |  |  | 49,621 |  |  |  | 98,584 |  |  |  | 101,130 |
Selling and marketing |  |  | 78,657 |  |  |  | 88,614 |  |  |  | 161,914 |  |  |  | 183,057 |
General and administrative |  |  | 62,109 |  |  |  | 64,233 |  |  |  | 129,928 |  |  |  | 118,624 |
Amortization of intangible assets |  |  | 29,100 |  |  |  | 28,667 |  |  |  | 55,316 |  |  |  | 57,193 |
Impairment of intangible assets |  |  | 522 |  |  |  | — |  |  |  | 522 |  |  |  | — |
Contingent consideration – compensation expense |  |  | — |  |  |  | 29,388 |  |  |  | — |  |  |  | 58,874 |
Contingent consideration – fair value adjustments |  |  | — |  |  |  | 799 |  |  |  | — |  |  |  | 10,839 |
Gain on sale of intellectual property |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (53,884 | )
Restructuring and divestiture charges |  |  | 11,559 |  |  |  | 12,462 |  |  |  | 29,909 |  |  |  | 16,395 |
|  |  | 231,862 |  |  |  | 273,874 |  |  |  | 476,173 |  |  |  | 492,228 |
Income from operations |  |  | 50,250 |  |  |  | 5,542 |  |  |  | 111,535 |  |  |  | 68,771 |
Interest income |  |  | 149 |  |  |  | 207 |  |  |  | 505 |  |  |  | 467 |
Interest expense |  |  | (54,449 | ) |  |  | (76,049 | ) |  |  | (115,739 | ) |  |  | (148,130 | )
Debt extinguishment loss |  |  | (4,437 | ) |  |  | (3,247 | ) |  |  | (7,377 | ) |  |  | (3,247 | )
Other (expense) income, net |  |  | (3,263 | ) |  |  | (201 | ) |  |  | (2,093 | ) |  |  | 1,038 |
Loss before income taxes |  |  | (11,750 | ) |  |  | (73,748 | ) |  |  | (13,169 | ) |  |  | (81,101 | )
Provision (benefit) for income taxes |  |  | 5,015 |  |  |  | (22,644 | ) |  |  | 8,947 |  |  |  | (33,115 | )
Net loss |  | $ | (16,765 | ) |  | $ | (51,104 | ) |  | $ | (22,116 | ) |  | $ | (47,986 | )
Net loss per common share: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Basic |  | $ | (0.06 | ) |  | $ | (0.19 | ) |  | $ | (0.08 | ) |  | $ | (0.18 | )
Diluted |  | $ | (0.06 | ) |  | $ | (0.19 | ) |  | $ | (0.08 | ) |  | $ | (0.18 | )
Weighted average number of shares outstanding: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Basic |  |  | 274,589 |  |  |  | 268,175 |  |  |  | 273,648 |  |  |  | 267,259 |
Diluted |  |  | 274,589 |  |  |  | 268,175 |  |  |  | 273,648 |  |  |  | 267,259 |

See accompanying notes.

3

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HOLOGIC, INC.

CONSOLIDATED STATEMENTS OF COMPREHENSIVE LOSS

(Unaudited)

(In thousands)

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | March 29, 2014 |  |  | March 30, 2013 |
Net loss |  | $ | (16,765 | ) |  | $ | (51,104 | ) |  | $ | (22,116 | ) |  | $ | (47,986 | )
Changes in foreign currency translation adjustment |  |  | (5,763 | ) |  |  | (8,288 | ) |  |  | (6,951 | ) |  |  | (6,319 | )
Changes in unrealized holding (losses) gains on available-for-sale securities |  |  | (1,048 | ) |  |  | 2,687 |  |  |  | (2,228 | ) |  |  | 2,130 |
Changes in pension plans, net of taxes of $152 for the six months ended March 29, 2014 |  |  | — |  |  |  | — |  |  |  | (615 | ) |  |  | — |
Other comprehensive loss |  |  | (6,811 | ) |  |  | (5,601 | ) |  |  | (9,794 | ) |  |  | (4,189 | )
Comprehensive loss |  | $ | (23,576 | ) |  | $ | (56,705 | ) |  | $ | (31,910 | ) |  | $ | (52,175 | )

See accompanying notes.

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HOLOGIC, INC.

CONSOLIDATED BALANCE SHEETS

(Unaudited)

(In thousands, except per share data)

|  | March 29, 2014 |  |  | September 28, 2013 |
ASSETS |  |  |  |  |  |  |  |
Current assets: |  |  |  |  |  |  |  |
Cash and cash equivalents |  | $ | 484,522 |  |  | $ | 822,490 |
Restricted cash |  |  | 5,857 |  |  |  | 6,914 |
Accounts receivable, less reserves of $10,930 and $8,798, respectively |  |  | 387,633 |  |  |  | 409,273 |
Inventories |  |  | 310,980 |  |  |  | 289,363 |
Deferred income tax assets |  |  | 34,398 |  |  |  | — |
Prepaid income taxes |  |  | — |  |  |  | 44,745 |
Prepaid expenses and other current assets |  |  | 41,170 |  |  |  | 48,361 |
Other current assets – assets held-for-sale |  |  | — |  |  |  | 2,997 |
Total current assets |  |  | 1,264,560 |  |  |  | 1,624,143 |
Property, plant and equipment, net |  |  | 472,154 |  |  |  | 491,528 |
Intangible assets, net |  |  | 3,667,597 |  |  |  | 3,906,722 |
Goodwill |  |  | 2,809,814 |  |  |  | 2,814,528 |
Other assets |  |  | 148,270 |  |  |  | 163,902 |
Total assets |  | $ | 8,362,395 |  |  | $ | 9,000,823 |
LIABILITIES AND STOCKHOLDERS’ EQUITY |  |  |  |  |  |  |  |
Current liabilities: |  |  |  |  |  |  |  |
Current portion of long-term debt |  | $ | 89,497 |  |  | $ | 563,812 |
Accounts payable |  |  | 68,197 |  |  |  | 80,534 |
Accrued expenses |  |  | 248,287 |  |  |  | 271,931 |
Deferred revenue |  |  | 144,702 |  |  |  | 132,319 |
Deferred income tax liabilities |  |  | — |  |  |  | 39,810 |
Total current liabilities |  |  | 550,683 |  |  |  | 1,088,406 |
Long-term debt, net of current portion |  |  | 4,183,958 |  |  |  | 4,242,098 |
Deferred income tax liabilities |  |  | 1,450,342 |  |  |  | 1,535,306 |
Deferred service obligations – long-term |  |  | 22,458 |  |  |  | 25,456 |
Other long-term liabilities |  |  | 174,851 |  |  |  | 168,044 |
Commitments and contingencies (Note 5) |  |  |  |  |  |  |  |
Stockholders’ equity: |  |  |  |  |  |  |  |
Preferred stock, $0.01 par value – 1,623 shares authorized; 0 shares issued |  |  | — |  |  |  | — |
Common stock, $0.01 par value – 750,000 shares authorized; 276,236 and 272,036 shares issued, respectively |  |  | 2,762 |  |  |  | 2,720 |
Additional paid-in-capital |  |  | 5,606,759 |  |  |  | 5,536,312 |
Accumulated deficit |  |  | (3,640,024 | ) |  |  | (3,616,392 | )
Accumulated other comprehensive income |  |  | 10,606 |  |  |  | 20,391 |
Treasury stock, at cost – 219 shares at September 28, 2013 |  |  | — |  |  |  | (1,518 | )
Total stockholders’ equity |  |  | 1,980,103 |  |  |  | 1,941,513 |
Total liabilities and stockholders’ equity |  | $ | 8,362,395 |  |  | $ | 9,000,823 |

See accompanying notes.

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HOLOGIC, INC.

CONSOLIDATED STATEMENTS OF CASH FLOWS

(Unaudited)

(In thousands)

|  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |
OPERATING ACTIVITIES |  |  |  |  |  |  |  |
Net loss |  | $ | (22,116 | ) |  | $ | (47,986 | )
Adjustments to reconcile net loss to net cash provided by operating activities: |  |  |  |  |  |  |  |
Depreciation |  |  | 48,998 |  |  |  | 46,218 |
Amortization |  |  | 208,865 |  |  |  | 208,213 |
Non-cash interest expense |  |  | 35,820 |  |  |  | 41,387 |
Stock-based compensation expense |  |  | 26,098 |  |  |  | 31,079 |
Excess tax benefit related to equity awards |  |  | (4,134 | ) |  |  | (4,437 | )
Deferred income taxes |  |  | (164,788 | ) |  |  | (92,502 | )
Gain on sale of intellectual property |  |  | — |  |  |  | (53,884 | )
Fair value adjustments to contingent consideration |  |  | — |  |  |  | 10,839 |
Fair value write-up of inventory sold |  |  | — |  |  |  | 52,397 |
Asset impairment charges |  |  | 33,308 |  |  |  | 47 |
Debt extinguishment loss |  |  | 7,377 |  |  |  | 3,247 |
Cost-method equity investment impairment |  |  | 3,705 |  |  |  | 1,733 |
Loss on disposal of property and equipment |  |  | 3,438 |  |  |  | 2,198 |
Other |  |  | (744 | ) |  |  | 1,976 |
Changes in operating assets and liabilities: |  |  |  |  |  |  |  |
Accounts receivable |  |  | 21,544 |  |  |  | 8,627 |
Inventories |  |  | (23,827 | ) |  |  | (3,719 | )
Prepaid income taxes |  |  | 44,745 |  |  |  | (16,700 | )
Prepaid expenses and other assets |  |  | 9,769 |  |  |  | 1,225 |
Accounts payable |  |  | (12,317 | ) |  |  | (12,939 | )
Accrued expenses and other liabilities |  |  | (6,511 | ) |  |  | (11,799 | )
Deferred revenue |  |  | 9,085 |  |  |  | 4,308 |
Net cash provided by operating activities |  |  | 218,315 |  |  |  | 169,528 |
INVESTING ACTIVITIES |  |  |  |  |  |  |  |
Acquisition of a business |  |  | — |  |  |  | (3,918 | )
Payment of additional acquisition consideration |  |  | — |  |  |  | (16,808 | )
Proceeds from sale of business, net of cash transferred |  |  | 2,431 |  |  |  | 86,250 |
Purchase of property and equipment |  |  | (19,777 | ) |  |  | (25,888 | )
Increase in equipment under customer usage agreements |  |  | (17,964 | ) |  |  | (20,955 | )
Net sales (purchases) of insurance contracts |  |  | 13,841 |  |  |  | (4,000 | )
Purchases of mutual funds |  |  | (29,732 | ) |  |  | — |
Sales of mutual funds |  |  | 18,564 |  |  |  | — |
Proceeds from sale of intellectual property |  |  | — |  |  |  | 60,000 |
Purchase of cost-method equity investments |  |  | — |  |  |  | (3,625 | )
Increase in other assets |  |  | (1,932 | ) |  |  | (4,951 | )
Net cash (used in) provided by investing activities |  |  | (34,569 | ) |  |  | 66,105 |
FINANCING ACTIVITIES |  |  |  |  |  |  |  |
Repayment of long-term debt |  |  | (562,500 | ) |  |  | (32,500 | )
Payment of debt issuance cost |  |  | (2,446 | ) |  |  | (7,019 | )
Payment of contingent consideration |  |  | — |  |  |  | (42,433 | )
Payment of deferred acquisition consideration |  |  | (4,965 | ) |  |  | — |
Net proceeds from issuance of common stock pursuant to employee stock plans |  |  | 53,718 |  |  |  | 37,623 |
Excess tax benefit related to equity awards |  |  | 4,134 |  |  |  | 4,437 |
Payment of minimum tax withholdings on net share settlements of equity awards |  |  | (9,163 | ) |  |  | (9,972 | )
Net cash used in financing activities |  |  | (521,222 | ) |  |  | (49,864 | )
Effect of exchange rate changes on cash and cash equivalents |  |  | (492 | ) |  |  | (1,203 | )
Net (decrease) increase in cash and cash equivalents |  |  | (337,968 | ) |  |  | 184,566 |
Cash and cash equivalents, beginning of period |  |  | 822,490 |  |  |  | 560,430 |
Cash and cash equivalents, end of period |  | $ | 484,522 |  |  | $ | 744,996 |

See accompanying notes.

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HOLOGIC, INC.

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)

(all tabular amounts in thousands except per share data)

(1) Basis of Presentation

The consolidated financial statements of Hologic, Inc. (“Hologic” or the “Company”) presented herein have been prepared pursuant to the rules of the Securities and Exchange Commission (“SEC”) for quarterly reports on Form 10-Q and do not include all of the information and disclosures required by U.S. generally accepted accounting principles (“GAAP”). These financial statements should be read in conjunction with the consolidated financial statements and related notes for the year ended September 28, 2013 included in the Company’s Form 10-K filed with the SEC on November 26, 2013. In the opinion of management, the financial statements and notes contain all adjustments (consisting of normal recurring accruals) considered necessary for a fair presentation of the Company’s financial position, results of operations and cash flows for the periods presented.

The consolidated financial statements include the accounts of the Company and its wholly owned subsidiaries. All intercompany transactions and balances have been eliminated in consolidation.

The preparation of financial statements in conformity with U.S. GAAP requires management to make significant estimates and assumptions that affect the reported amounts of assets and liabilities and disclosure of contingent assets and liabilities at the date of the financial statements and the reported amounts of revenues and expenses during the reporting periods. Actual results could differ from management’s estimates if past experience or other assumptions do not turn out to be substantially accurate. Operating results for the three and six months ended March 29, 2014 are not necessarily indicative of the results to be expected for any other interim period or the entire fiscal year ending September 27, 2014.

Subsequent Events Consideration

The Company considers events or transactions that occur after the balance sheet date but prior to the issuance of the financial statements to provide additional evidence for certain estimates or to identify matters that require additional disclosure. Subsequent events have been evaluated as required. There were no material recognized subsequent events recorded in the unaudited consolidated financial statements as of and for the three and six months ended March 29, 2014.

(2) Fair Value Measurements

Assets/Liabilities Measured and Recorded at Fair Value on a Recurring Basis

The Company has an equity investment in a publicly-traded company and mutual funds, both of which are valued using quoted market prices, representing Level 1 assets. The Company has a payment obligation to the participants under its Nonqualified Deferred Compensation Plan (“DCP”). This liability is recorded at fair value based on the underlying value of certain hypothetical investments under the DCP as designated by each participant for their benefit. Since the value of the DCP obligation is based on market prices, the liability is classified within Level 1. In addition, in fiscal 2013, the Company had contingent consideration liabilities related to its acquisitions that were recorded at fair value and were based on Level 3 inputs (see Note 5(a)).

Assets and liabilities measured and recorded at fair value on a recurring basis consisted of the following at March 29, 2014:

|  |  |  |  | Fair Value at Reporting Date Using |
|  | Balance as of March 29, 2014 |  |  | Quoted Prices in Active Market for Identical Assets (Level 1) |  |  | Significant Other Observable Inputs (Level 2) |  |  | Significant Unobservable Inputs (Level 3) |
Assets: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Marketable securities: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Equity security |  | $ | 15,859 |  |  | $ | 15,859 |  |  | $ | — |  |  | $ | — |
Mutual funds |  |  | 18,744 |  |  |  | 18,744 |  |  |  | — |  |  |  | — |
Total |  | $ | 34,603 |  |  | $ | 34,603 |  |  | $ | — |  |  | $ | — |
Liabilities: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Deferred compensation liabilities |  | $ | 40,464 |  |  | $ | 40,464 |  |  | $ | — |  |  | $ | — |
Contingent consideration |  |  | 3,393 |  |  |  | — |  |  |  | — |  |  |  | 3,393 |
Total |  | $ | 43,857 |  |  | $ | 40,464 |  |  | $ | — |  |  | $ | 3,393 |

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Changes in the fair value of recurring fair value measurements using significant unobservable inputs (Level 3), which solely consisted of contingent consideration liabilities, were as follows:

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | March 29, 2014 |  |  | March 30, 2013 |
Balance at beginning of period |  | $ | 3,647 |  |  | $ | 93,000 |  |  | $ | 3,780 |  |  | $ | 86,368 |
Fair value adjustments |  |  | — |  |  |  | 799 |  |  |  | — |  |  |  | 10,839 |
Payments |  |  | (254 | ) |  |  | (90,172 | ) |  |  | (387 | ) |  |  | (93,580 | )
Balance at end of period |  | $ | 3,393 |  |  | $ | 3,627 |  |  | $ | 3,393 |  |  | $ | 3,627 |

The contingent consideration liability at March 29, 2014 is related to the Company’s acquisition of Interlace Medical, Inc. (“Interlace”) and represents the remaining amounts withheld from payments made to the former stockholders of Interlace for legal indemnification provisions. As of the end of the second quarter of fiscal 2013, the Interlace contingent liability was no longer being remeasured as the final measurement period lapsed. The withheld amount is being used to pay qualifying legal expenses in connection with the litigation with Smith & Nephew, Inc. (“Smith & Nephew”) (see Note 5(b)).

Assets Measured and Recorded at Fair Value on a Nonrecurring Basis

The Company remeasures the fair value of certain assets and liabilities upon the occurrence of certain events. Such assets are comprised of cost-method equity investments and long-lived assets, including property, plant and equipment, intangible assets and goodwill.

In the second quarter of fiscal 2014, the Company evaluated its MRI breast coils product line asset group, which is within its Breast Health segment, for impairment due to the Company’s current expectation that it will be sold or disposed of significantly before the end of its previously estimated useful life. The undiscounted cash flows expected to be generated by this asset group over its estimated remaining useful life were not sufficient to recover its carrying value. The Company has estimated the fair value of the asset group using market participant assumptions, which is based on underlying cash flow estimates, resulting in an impairment charge of $28.6 million. Pursuant to ASC 360, Property, Plant, and Equipment-Other, subtopic 10-35-28, the impairment charge has been allocated to the long-lived assets, with $27.1 million to intangible assets and $1.5 million to property and equipment. The property and equipment charge has been recorded to cost of product revenues and general and administrative expenses in the amounts of $0.3 million and $1.2 million, respectively. The estimated fair value of this asset group is subject to change and additional charges may be recorded in the future. The Company believes this adjustment falls within Level 3 of the fair value hierarchy.

In the first quarter of fiscal 2014, the Company recorded a $3.1 million impairment charge to record certain of its buildings at fair value related to the Hitec organic photoconductor manufacturing line shutdown (see Note 3). The Company believes this adjustment falls within Level 3 of the fair value hierarchy.

The Company holds certain cost-method equity investments in non-publicly traded securities aggregating $8.7 million and $12.6 million at March 29, 2014 and September 28, 2013, respectively, which are included in other long-term assets on the Company’s Consolidated Balance Sheets. These investments are generally carried at cost, less any write-downs for other-than-temporary impairment charges. To determine the fair value of these investments, the Company uses all available financial information related to the entities, including information based on recent or pending third-party equity investments in these entities. In certain instances, a cost method investment’s fair value is not estimated as there are no identified events or changes in circumstances that may have a significant adverse effect on the fair value of the investment and to do so would be impractical. In the three and six month periods ended March 29, 2014, the Company recorded other-than-temporary impairment charges of $3.0 million and $3.7 million, respectively, related to its cost-method equity investments. In the second quarter of fiscal 2013, the Company recorded an other-than-temporary impairment charge of $1.7 million related to one of these investments. These represent Level 3 measurements.

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The following chart depicts the level of inputs within the fair value hierarchy used to estimate the fair value of assets measured on a nonrecurring basis for which the Company recorded impairment charges in fiscal 2014:

|  |  |  |  | Fair Value Measurements Using |  |  |  |
|  | Fair Value |  |  | Quoted Prices in Active Market for Identical Assets (Level 1) |  | Significant Other Observable Inputs (Level 2) |  | Significant Unobservable Inputs (Level 3) |  |  | Total Gains (Losses) |
Fiscal 2014: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Intangible assets |  | $ | 18,272 |  |  |  |  |  |  | $ | 18,272 |  |  | $ | (27,089 | )
Property and equipment |  |  | 1,015 |  |  |  |  |  |  |  | 1,015 |  |  |  | (1,505 | )
Buildings |  |  | 1,388 |  |  |  |  |  |  |  | 1,388 |  |  |  | (3,132 | )
Cost-method equity investments |  |  | 778 |  |  |  |  |  |  |  | 778 |  |  |  | (3,705 | )
|  |  |  |  |  |  |  |  |  |  |  |  |  | $ | (35,431 | )

Disclosure of Fair Value of Financial Instruments

The Company’s financial instruments mainly consist of cash and cash equivalents, accounts receivable, marketable securities, cost-method equity investments, insurance contracts, DCP liability, accounts payable and debt obligations. The carrying amounts of the Company’s cash equivalents, accounts receivable and accounts payable approximate their fair value due to the short-term nature of these instruments. The Company’s marketable securities are recorded at fair value. The carrying amount of the insurance contracts are recorded at the cash surrender value, as required by U.S. GAAP, which approximates fair value, and the related DCP liability is recorded at fair value. The Company believes the carrying amounts of its cost-method equity investments approximate fair value.

Amounts outstanding under the Company’s Credit Agreement of $2.08 billion aggregate principal are subject to variable rates of interest based on current market rates, and as such, the Company believes the carrying amount of these obligations approximates fair value. The Company’s Senior Notes had a fair value of approximately $1.06 billion as of March 29, 2014 based on their trading price, representing a Level 1 measurement. The fair value of the Company’s Convertible Notes is based on the trading prices of the respective notes at the dates noted and represents a Level 1 measurement. Refer to Note 4 for the carrying amounts of the various components of the Company’s debt.

The estimated fair values of the Company’s Convertible Notes were as follows:

|  | March 29, 2014 |  |  | September 28, 2013 |
2007 Notes |  | $ | — |  |  | $ | 405,000 |
2010 Notes |  |  | 507,800 |  |  |  | 510,800 |
2012 Notes |  |  | 502,800 |  |  |  | 518,800 |
2013 Notes |  |  | 390,900 |  |  |  | 385,700 |
|  | $ | 1,401,500 |  |  | $ | 1,820,300 |

As disclosed in Note 4, the Company redeemed the outstanding 2007 Notes in December 2013.

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##### Table of Contents

(3) Restructuring and Divestiture Charges

The Company evaluates its operations for opportunities to improve operational effectiveness and efficiency, including facility and operations consolidation, and to better align expenses with revenues. As a result of these assessments, the Company has undertaken various restructuring actions which are described below. The following table displays charges taken related to restructuring actions in fiscal 2014, 2013 and 2012 and a rollforward of the charges to the accrued balances as of March 29, 2014:

Restructuring and Divestiture Charges |  | Consolidation of Diagnostics Operations |  |  | Closure of Indianapolis Facility |  |  | Fiscal 2014 Actions |  |  | Fiscal 2013 Actions |  |  | Other Operating Cost Reductions |  |  | Total |
Fiscal 2012 charges: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Non-cash impairment charge |  | $ | 585 |  |  | $ | — |  |  | $ | — |  |  | $ | — |  |  | $ | — |  |  | $ | 585 |
Purchase orders and other contractual obligations |  |  | — |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 351 |  |  |  | 351 |
Workforce reductions |  |  | 14,202 |  |  |  | 879 |  |  |  | — |  |  |  | — |  |  |  | 168 |  |  |  | 15,249 |
Facility closure costs |  |  | — |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 430 |  |  |  | 430 |
Other |  |  | — |  |  |  | 900 |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 900 |
Fiscal 2012 restructuring and divestiture charges |  | $ | 14,787 |  |  | $ | 1,779 |  |  | $ | — |  |  | $ | — |  |  | $ | 949 |  |  | $ | 17,515 |
Fiscal 2013 charges: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Workforce reductions |  | $ | 13,950 |  |  | $ | 4,805 |  |  | $ | — |  |  | $ | 11,332 |  |  | $ | 1,127 |  |  | $ | 31,214 |
Facility closure costs |  |  | — |  |  |  | 173 |  |  |  | — |  |  |  | — |  |  |  | 377 |  |  |  | 550 |
Other |  |  | — |  |  |  | 651 |  |  |  | — |  |  |  | 42 |  |  |  | 236 |  |  |  | 929 |
Fiscal 2013 restructuring charges |  | $ | 13,950 |  |  | $ | 5,629 |  |  | $ | — |  |  | $ | 11,374 |  |  | $ | 1,740 |  |  | $ | 32,693 |
Divestiture net charges |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 112 |
Fiscal 2013 restructuring and divestiture charges |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | $ | 32,805 |
Fiscal 2014 charges: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Workforce reductions |  | $ | 1,671 |  |  | $ | 238 |  |  | $ | 15,948 |  |  | $ | 932 |  |  | $ | 7,194 |  |  | $ | 25,983 |
Property impairment |  |  | — |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 3,132 |  |  |  | 3,132 |
Facility closure costs |  |  | — |  |  |  | 445 |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 445 |
Other |  |  | — |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 128 |  |  |  | 128 |
Fiscal 2014 restructuring charges |  | $ | 1,671 |  |  | $ | 683 |  |  | $ | 15,948 |  |  | $ | 932 |  |  | $ | 10,454 |  |  | $ | 29,688 |
Divestiture net charges |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 221 |
Fiscal 2014 restructuring and divestiture charges |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | $ | 29,909 |
Rollforward of Accrued Restructuring |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Fiscal 2012 charges |  | $ | 14,787 |  |  | $ | 1,779 |  |  | $ | — |  |  | $ | — |  |  | $ | 949 |  |  | $ | 17,515 |
Non-cash impairment charges |  |  | (585 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (585 | )
Stock-based compensation |  |  | (3,500 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (3,500 | )
Severance payments |  |  | (2,423 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (206 | ) |  |  | (2,629 | )
Other payments |  |  | — |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (781 | ) |  |  | (781 | )
Acquired |  |  | 83 |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 83 |
Foreign exchange and other adjustments |  |  | 22 |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 91 |  |  |  | 113 |
Balance at September 29, 2012 |  | $ | 8,384 |  |  | $ | 1,779 |  |  | $ | — |  |  | $ | — |  |  | $ | 53 |  |  | $ | 10,216 |
Fiscal 2013 restructuring charges |  | $ | 13,950 |  |  | $ | 5,629 |  |  |  | — |  |  | $ | 11,374 |  |  | $ | 1,740 |  |  | $ | 32,693 |
Stock-based compensation |  |  | (6,322 | ) |  |  | — |  |  |  | — |  |  |  | (1,595 | ) |  |  | — |  |  |  | (7,917 | )
Non-cash impairment charges |  |  | — |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (54 | ) |  |  | (54 | )
Severance payments |  |  | (13,068 | ) |  |  | (3,048 | ) |  |  | — |  |  |  | (4,425 | ) |  |  | (897 | ) |  |  | (21,438 | )
Other payments |  |  | — |  |  |  | (566 | ) |  |  | — |  |  |  | (25 | ) |  |  | (560 | ) |  |  | (1,151 | )

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##### Table of Contents

Rollforward of Accrued Restructuring |  | Consolidation of Diagnostics Operations |  |  | Closure of Indianapolis Facility |  |  | Fiscal 2014 Actions |  |  | Fiscal 2013 Actions |  |  | Other Operating Cost Reductions |  |  | Total |
Foreign exchange and other adjustments |  |  | (2 | ) |  |  | — |  |  |  | — |  |  |  | (14 | ) |  |  | 6 |  |  |  | (10 | )
Balance at September 28, 2013 |  | $ | 2,942 |  |  | $ | 3,794 |  |  | $ | — |  |  | $ | 5,315 |  |  | $ | 288 |  |  | $ | 12,339 |
Fiscal 2014 restructuring charges |  | $ | 1,671 |  |  | $ | 683 |  |  | $ | 15,948 |  |  | $ | 932 |  |  | $ | 10,454 |  |  | $ | 29,688 |
Stock-based compensation |  |  | — |  |  |  | — |  |  |  | (4,731 | ) |  |  | (30 | ) |  |  | — |  |  |  | (4,761 | )
Non-cash impairment charges |  |  | — |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (3,132 | ) |  |  | (3,132 | )
Severance payments |  |  | (421 | ) |  |  | (3,946 | ) |  |  | (6,123 | ) |  |  | (4,176 | ) |  |  | (1,322 | ) |  |  | (15,988 | )
Other payments |  |  | — |  |  |  | (353 | ) |  |  | — |  |  |  | (9 | ) |  |  | (128 | ) |  |  | (490 | )
Foreign exchange and other adjustments |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (3 | ) |  |  | 5 |  |  |  | 2 |
Balance at March 29, 2014 |  | $ | 4,192 |  |  | $ | 178 |  |  | $ | 5,094 |  |  | $ | 2,029 |  |  | $ | 6,165 |  |  | $ | 17,658 |

Consolidation of Diagnostics Operations

In connection with its acquisition of Gen-Probe Incorporated (“Gen-Probe”), the Company implemented restructuring actions to consolidate its Diagnostics operations, including streamlining product development initiatives, reducing overlapping functional areas in sales, marketing and general and administrative functions, and consolidating manufacturing resources, field services and support. As a result, the Company terminated certain employees from Gen-Probe and its legacy diagnostics business in research and development, sales, marketing, and general and administrative functions. The Company recorded severance and benefit charges in fiscal 2012 of $13.3 million related to this action pursuant to ASC 420, Exit or Disposal Cost Obligations (ASC 420). The majority of these employees ceased working in the fourth quarter of fiscal 2012, and their full severance charge was recorded in the fourth quarter of fiscal 2012. In addition, certain of the terminated Gen-Probe employees had unvested stock options, which were accelerated at termination pursuant to the stock options’ original terms. As such, the severance charges in fiscal 2012 include $3.5 million of stock-based compensation expense. In fiscal 2013, the Company recorded $10.8 million of severance charges, including $6.3 million for stock-based compensation. Included in these charges is $9.7 million recorded in the second quarter of fiscal 2013 related to the termination of certain Gen-Probe executives, including Carl Hull, Gen-Probe’s former Chairman, President and Chief Executive Officer. The charge was for the acceleration of certain retention payments and equity awards pursuant to the original terms of the related agreements. No additional charges were recorded in fiscal 2014 under this portion of the action. The Company recorded $9.7 million and $10.5 million of severance charges in the three and six months ended March 30, 2013, respectively.

In addition, the Company is in the process of moving its legacy molecular diagnostics operations from Madison, Wisconsin to Gen-Probe’s facilities in San Diego, California. This transfer is expected to be finalized by the end of fiscal 2014 and, as a result, many of the employees in Madison will be terminated. The Company is recording severance and benefit charges pursuant to ASC 420 and estimates the total severance and benefits charge to be approximately $7.3 million, which is being recorded ratably over the estimated service period of the affected employees. The Company recorded $0.9 million and $1.7 million in the three and six months ended March 29, 2014, respectively, and $1.0 million and $2.0 million in the three and six months ended March 30, 2013, respectively. In fiscal 2013 and 2012, the Company recorded $3.2 million and $0.9 million, respectively, for severance and benefits related to this action.

Closure of Indianapolis Facility

In the fourth quarter of fiscal 2012, the Company finalized its decision to transfer production of the majority of its interventional breast products, which are included within the Breast Health reporting segment, from its Indianapolis, Indiana facility to its facility in Costa Rica. The transfer was completed in the first quarter of fiscal 2014, and the termination of employees at the Indianapolis location was completed. The Company recorded severance and benefit charges pursuant to ASC 420 and the total severance and benefits charge under this action was $5.9 million, which was recorded ratably over the required service period of the affected employees. The Company recorded severance and benefits charges of $0.2 million in the first quarter of fiscal 2014. The Company recorded severance and benefit charges of $1.5 million and $3.0 million in the three and six months ended March 30, 2013, respectively. In fiscal 2013 and 2012, the Company recorded $4.8 million and $0.9 million, respectively, for severance and benefits related to this action. In addition, the Company recorded charges of $0.4 million in the first quarter of fiscal 2014 related to the termination of its lease and remaining lease payments as of the cease-use date. The Company also recorded miscellaneous charges of $0.8 million in fiscal 2013 and $0.9 million in fiscal 2012 for amounts owed to the state of Indiana for employment credits. This action is complete and no additional charges will be recorded.

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Fiscal 2014 Actions

During the first quarter of fiscal 2014, the Company implemented a cost reduction initiative comprised of reducing headcount and evaluating research projects and operating costs. In connection with this plan, the Company terminated certain employees on a worldwide basis. The Company recorded the severance and benefit charges pursuant to ASC 420 and ASC 712, Compensation-Nonretirement Postemployment Benefits (ASC 712), depending on the nature of the benefits. The Company recorded $6.3 million of severance and benefit charges in the first quarter of fiscal 2014, which includes $0.4 million of stock-based compensation.

On December 6, 2013, Stephen P. MacMillan was appointed as President, Chief Executive Officer and a director of the Company. The employment of John W. Cumming, the Company’s prior President and Chief Executive Officer, terminated upon Mr. MacMillan’s appointment. The Company provided separation benefits to Mr. Cumming pursuant to his employment letter dated July 18, 2013 resulting in a charge of $6.6 million in the first quarter of fiscal 2014, which included $4.4 million of stock-based compensation related to the acceleration of all of Mr. Cumming’s outstanding equity awards in accordance with the existing terms of Mr. Cumming’s share based payment arrangements. An additional $0.2 million was recorded in the second quarter of fiscal 2014.

In the second quarter of fiscal 2014, the Company terminated certain executives and employees and recorded severance and benefit charges of $3.0 million pursuant to ASC 712.

Fiscal 2013 Actions

During the third quarter of fiscal 2013, the Company implemented a cost reduction initiative comprised of reducing headcount and evaluating research projects and operating costs. In connection with this plan, the Company terminated certain employees on a worldwide basis. The Company primarily recorded severance and benefit charges pursuant to ASC 420, and the total severance and benefits charge was $5.4 million related to this plan. For those employees who continued to be employed beyond the minimum retention period, charges were recorded ratably over the estimated service period of the affected employees. The Company recorded severance and benefit charges of $0.2 million and $0.9 million in the three and six months ended March 29, 2014, respectively. The Company recorded $4.6 million of severance and benefit charges in the second half of fiscal 2013 related to this action.

During the fourth quarter of fiscal 2013, Robert A. Cascella resigned as the Company’s President and Chief Executive Officer and as a member of the Board of Directors of the Company, and effective at the same time, Mr. Cumming was appointed as the Company’s President and Chief Executive Officer. In connection with this management change, additional headcount reductions were implemented. As a result of this action, the Company recorded $6.8 million in the fourth quarter of fiscal 2013 for severance and benefits charges. All employees were notified prior to September 28, 2013 and primarily ceased employment in the fourth quarter of fiscal 2013. The severance and benefit charges were recorded pursuant to ASC 712 for those employees with contractual arrangements and under ASC 420 for the remainder of the affected employees. In addition to the acceleration of stock options pursuant to the stock options’ original terms for certain employees, the Company also modified the terms of equity awards to certain employees resulting in aggregate stock-based compensation charges of $1.4 million recorded in the fourth quarter of fiscal 2013.

Other Operating Cost Reductions:

Hitec-Imaging Organic Photoconductor Manufacturing Line Shut-down

In the fourth quarter of fiscal 2013, in connection with the Company’s cost reduction initiatives, the Company decided to shut-down its Hitec-Imaging organic photoconductor manufacturing line located in Germany. This production line is included within the Breast Health segment. As a result, the Company terminated certain employees, primarily in manufacturing, in fiscal 2014. During the first quarter of fiscal 2014, the Company completed its negotiations with the local Works Council to determine severance benefits for the approximately 95 affected employees. The Company is recording severance and benefit charges pursuant to ASC 420 and estimates the severance and related charges will be approximately $9.1 million. The Company recorded charges of $7.3 million in the second quarter of fiscal 2014 in connection with terminating these employees. Additional charges will be recorded in fiscal 2014 and 2015 based on the terms of the benefit arrangements to certain employees.

In the first quarter of fiscal 2014, the Company recorded an impairment charge of $3.1 million to record certain buildings at this location in Germany to their estimated fair value. This charge is included within restructuring and divestiture charges.

Consolidation of Selenium Panel Coating Production

During the third quarter of fiscal 2012, the Company finalized its decision to consolidate its Selenium panel coating process and transfer the production line to its Newark, Delaware facility from its Hitec-Imaging German subsidiary. This production line is included within the Breast Health segment. The transfer was completed in the fourth quarter of fiscal 2013. In connection with this consolidation plan, the Company terminated certain employees, primarily manufacturing personnel. Severance charges were recorded pursuant to ASC 420. The termination communications began in January 2013 and the Company recorded severance charges of $0.6 million in the second quarter of fiscal 2013. In connection with this action, the Company recorded severance charges of $1.1 million in fiscal 2013.

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Divestitures

In the fourth quarter of fiscal 2013, the Company designated the assets of its Elucigene product line as assets held-for-sale, and recorded a charge of $0.7 million to record the assets at fair value. In the first quarter of fiscal 2014, the Company finalized the sale of the assets for $2.8 million, resulting in additional charges of $0.2 million for the six months ended March 29, 2014. At September 28, 2013, assets held-for-sale consisted of inventory and certain equipment valued at $2.4 million and goodwill of $0.6 million.

The Company completed the sale of its Lifecodes business and recorded a net gain of $0.9 million in the second quarter of fiscal 2013. For the year ended September 28, 2013, the Company recorded a charge of $0.3 million related to the disposition of certain other assets held-for-sale.

(4) Borrowings and Credit Arrangements

The Company’s borrowings consisted of the following:

|  | March 29, 2014 |  |  | September 28, 2013 |
Current debt obligations, net of debt discount: |  |  |  |  |  |  |  |
Term Loan A |  | $ | 74,628 |  |  | $ | 49,713 |
Term Loan B |  |  | 14,869 |  |  |  | 113,966 |
Convertible Notes |  |  | — |  |  |  | 400,133 |
Total current debt obligations |  |  | 89,497 |  |  |  | 563,812 |
Long-term debt obligations, net of debt discount: |  |  |  |  |  |  |  |
Term Loan A |  |  | 845,782 |  |  |  | 894,834 |
Term Loan B |  |  | 1,127,581 |  |  |  | 1,159,272 |
Senior Notes |  |  | 1,000,000 |  |  |  | 1,000,000 |
Convertible Notes |  |  | 1,210,595 |  |  |  | 1,187,992 |
Total long-term debt obligations |  |  | 4,183,958 |  |  |  | 4,242,098 |
Total debt obligations |  | $ | 4,273,455 |  |  | $ | 4,805,910 |

Credit Agreement

On October 31, 2013, the Company voluntarily pre-paid $100.0 million of its Term Loan B facility, which was reflected in current debt obligations as of September 28, 2013. Pursuant to ASC 470, Debt (ASC 470), the Company recorded a debt extinguishment loss of $2.9 million in the first quarter of fiscal 2014 to write-off the pro-rata amount of unamortized debt discount and deferred issuance costs related to this voluntary prepayment.

On February 26, 2014, the Company, the Guarantors, Goldman Sachs, and the Lenders entered into Refinancing Amendment No. 3 to the credit and guaranty agreement among the parties (as amended, the “Credit Agreement”). The Refinancing Amendment No. 3 refinanced the Company’s existing senior secured tranche B term loan facility (the “Existing Term Loan B”) with a new senior secured tranche B term loan facility (the “New Term Loan B”) with an issue price of 99.875% of the principal amount of the Existing Term Loan B (subject also to the prepayment referenced below). This amendment resulted in a 50 basis point reduction in the interest rate on the New Term Loan B as of the Refinancing Amendment No. 3 closing date. Amounts outstanding under the New Term Loan B will bear interest, at the Company’s option: (A) at the Base Rate, with a floor of 1.75%, plus 1.50% per annum, or (B) at the Adjusted Eurodollar Rate (i.e., the Libor rate), with a floor of 0.75% plus 2.50% per annum. In addition, the Company voluntarily prepaid $25.0 million of the New Term Loan B.

Pursuant to ASC 470, the accounting for this refinancing is required to be evaluated on a creditor-by-creditor basis to determine whether each transaction should be accounted for as a modification or extinguishment. Certain creditors under the Credit Agreement did not participate in this refinancing transaction and ceased being creditors of the Company, and certain creditors reduced their positions. As a result, the Company recorded a debt extinguishment loss of $4.4 million in the second quarter of fiscal 2014 to write-off the pro-rata amount of unamortized debt discount and deferred issuance costs related to these creditors. For the remainder of the creditors, this transaction has been accounted for as a modification because the present value of the cash flows on a creditor-by-creditor basis between the two debt instruments was less than 10%. Pursuant to ASC 470, subtopic 50-40, third-party costs of $1.0 million related to this transaction were expensed.

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Borrowings outstanding under the Credit Agreement for the three and six months ended March 29, 2014 had weighted-average interest rates of 2.96% and 3.01%, respectively. The interest rates on the outstanding Term Loan A and Term Loan B borrowings at March 29, 2014 were 2.15% and 3.25%, respectively. Interest expense under the Credit Agreement totaled $19.2 million and $39.6 million for the three and six months ended March 29, 2014, respectively, which includes non-cash interest expense of $3.2 million and $6.5 million, respectively, related to the amortization of the deferred financing costs and accretion of the debt discount. Interest expense totaled $28.5 million and $58.6 million for the three and six months ended March 30, 2013, respectively, which includes non-cash interest expense of $4.1 million and $7.8 million related to the amortization of the deferred financing costs and accretion of the debt discount.

In the second quarter of fiscal 2013, the Company executed Refinancing Amendment No. 1 to the Credit Agreement which reduced the interest rate on the Term Loan A facility. Consistent with the accounting treatment noted above for Refinancing Amendment No. 3, in connection with this transaction, the Company recorded a debt extinguishment loss of $3.2 million and expensed $2.4 million of third-party costs to interest expense.

Senior Notes

The Company’s 6.25% senior notes due 2020 (the “Senior Notes”) mature on August 1, 2020 and bear interest at the rate of 6.25% per year, payable semi-annually on February 1 and August 1 of each year, commencing on February 1, 2013. The Company recorded interest expense of $16.0 million and $32.0 million in both the three and six month periods ended March 29, 2014 and March 30, 2013, respectively, which includes non-cash interest expense of $0.4 million and $0.8 million in both the three and six month periods ended March 29, 2014 and March 30, 2013, respectively, related to the amortization of the deferred financing costs.

Convertible Notes

On November 14, 2013, the Company announced that it had issued a notice of redemption to the holders of its 2.00% Convertible Senior Notes due 2037 (“2007 Notes”) to redeem any 2007 Notes outstanding on December 18, 2013 at a redemption price payable in cash equal to 100% of the principal amount of the 2007 Notes plus accrued and unpaid interest to, but not including, December 18, 2013. Holders of the 2007 Notes also had the option of putting the 2007 Notes to the Company as of December 13, 2013. The 2007 Notes were redeemed at their par value aggregating $405.0 million. Under ASC 470, the derecognition of the 2007 Notes did not result in a gain or loss as the fair value of the liability component of the 2007 Notes was determined to be equal to the consideration paid to redeem the 2007 Notes, and as a result, no value was allocated to the reacquisition of the conversion option.

Interest expense under the Convertible Notes is as follows:

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | March 29, 2014 |  |  | March 30, 2013 |
Amortization of debt discount |  | $ | 8,341 |  |  | $ | 13,621 |  |  | $ | 19,887 |  |  | $ | 29,265 |
Amortization of deferred financing costs |  |  | 413 |  |  |  | 790 |  |  |  | 1,063 |  |  |  | 1,698 |
Principal accretion |  |  | 3,810 |  |  |  | 1,789 |  |  |  | 7,584 |  |  |  | 1,789 |
Non-cash interest expense |  |  | 12,564 |  |  |  | 16,200 |  |  |  | 28,534 |  |  |  | 32,752 |
2.00% accrued interest |  |  | 4,751 |  |  |  | 8,616 |  |  |  | 12,870 |  |  |  | 17,226 |
|  | $ | 17,315 |  |  | $ | 24,816 |  |  | $ | 41,404 |  |  | $ | 49,978 |

(5) Commitments and Contingencies

(a) Contingent Earn-Out Payments

In connection with certain of its acquisitions, the Company incurred obligations to make contingent earn-out payments tied to performance criteria, principally revenue growth of the acquired businesses over a specified period.

In the first quarter of fiscal 2013, the Company made its final contingent consideration payment of $16.8 million to the former shareholders of Adiana, Inc., which was net of amounts withheld for qualifying legal costs, and its final contingent consideration payment of $3.4 million to the former shareholders of Sentinelle Medical Inc.

In connection with the Company’s acquisition of Interlace in fiscal 2011, the Company had an obligation to the former Interlace stockholders to make contingent payments over a two-year period. Pursuant to ASC 805, Business Combinations, the Company recorded its estimate of the fair value of the contingent consideration liability based on future revenue projections of the Interlace

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business. The final measurement period ended during the second quarter of fiscal 2013, resulting in a contingent consideration liability of $93.8 million. Of this amount, $86.9 million was paid to the former Interlace stockholders in the second quarter of fiscal 2013. The remainder was withheld for legal indemnification provisions and is being used to pay qualifying legal expenses. At March 29, 2014, the Company had accrued $3.4 million.

In connection with the Company’s acquisition of TCT International Co., Ltd. (“TCT”) in June 2011, the Company had an obligation to certain of the former TCT shareholders, based on future employment, to make contingent payments over a two year period. These earnouts were recorded as compensation expense ratably over the required service periods. The second and final earn-out period was completed in the third quarter of fiscal 2013, and the Company paid $87.4 million of this earn-out in the fourth quarter of fiscal 2013. The remaining $31.1 million of this earn-out was paid in the first quarter of fiscal 2014.

There was no contingent consideration expense recorded in the first six months of fiscal 2014. A summary of amounts recorded to the Consolidated Statements of Operations is as follows:

Statement of Operations Line Item – 3 Months Ended March 30, 2013 |  | Interlace |  |  | TCT |  |  | Total |
Contingent consideration – compensation expense |  | $ | — |  |  | $ | 29,388 |  |  | $ | 29,388 |
Contingent consideration – fair value adjustments |  |  | 799 |  |  |  | — |  |  |  | 799 |
|  | $ | 799 |  |  | $ | 29,388 |  |  | $ | 30,187 |

Statement of Operations Line Item – 6 Months Ended March 30, 2013 |  | Interlace |  |  | TCT |  |  | Total |
Contingent consideration – compensation expense |  | $ | — |  |  | $ | 58,874 |  |  | $ | 58,874 |
Contingent consideration – fair value adjustments |  |  | 10,839 |  |  |  | — |  |  |  | 10,839 |
|  | $ | 10,839 |  |  | $ | 58,874 |  |  | $ | 69,713 |

(b) Litigation and Related Matters

On June 9, 2010, Smith & Nephew filed suit against Interlace, which the Company acquired on January 6, 2011, in the United States District Court for the District of Massachusetts. The complaint alleged that the Interlace MyoSure hysteroscopic tissue removal device infringed U.S. patent 7,226,459. On November 22, 2011, Smith & Nephew filed suit against the Company in the United States District Court for the District of Massachusetts. The complaint alleged that use of the MyoSure hysteroscopic tissue removal system infringed U.S. patent 8,061,359. Both complaints sought permanent injunctive relief and unspecified damages. On September 4, 2012, following a two week trial, the jury returned a verdict of infringement of both the ‘459 and ‘359 patents and assessed damages of $4.0 million. A bench trial regarding the Company’s assertion of inequitable conduct on the part of Smith & Nephew with regard to the ‘359 patent was held on December 9, 2012 and oral arguments on the issue of inequitable conduct were presented on February 27, 2013. On June 27, 2013, the Court denied the Company’s motions related to inequitable conduct and allowed Smith & Nephew’s request for injunction, but ordered that enforcement of the injunction be stayed until final resolution, including appeal, of the current re-examinations of both patents at the United States Patent and Trademark Office (“USPTO”). The Court also rejected the jury’s damage award and ordered the parties to identify a mechanism for resolving the damages issue. On September 12, 2013, a status conference was held, and the Court invited the parties to submit briefs on the relevance of recent activity in the re-examinations at the USPTO. A hearing on this topic was held on October 29, 2013, and the parties are awaiting the Court’s ruling. The Company intends to file post-trial motions seeking to reverse the jury’s verdict. On January 14, 2014, the USPTO issued a final decision that the claims of the ‘459 patent asserted as part of the litigation are not patentable. The re-examination of the ‘359 patent is on-going. It is expected that patentability decisions made by the USPTO for both patents will proceed to appeal. At this time, based on available information regarding this litigation, the Company is unable to reasonably assess the ultimate outcome of this case or determine an estimate, or a range of estimates, of potential losses.

On March 6, 2012, Enzo Life Sciences, Inc. (“Enzo”) filed suit against the Company in the United States District Court for the District of Delaware. The complaint alleged that certain of the Company’s molecular diagnostics products, including without limitation products based on its proprietary Invader chemistry, such as Cervista HPV HR and Cervista HPV 16/18, infringe Enzo’s U.S. patent 6,992,180. The complaint seeks permanent injunctive relief and unspecified damages. The Company was formally served with the complaint on July 3, 2012, and a trial is tentatively scheduled for the fall of 2015. In January 2012, Enzo filed suit against Gen-Probe in the United States District Court for the District of Delaware. The Gen-Probe complaint alleged that certain of Gen-Probe’s diagnostics products, including products that incorporate Gen-Probe’s patented HPA technology, such as the Aptima Combo 2 and Aptima HPV assays, infringe Enzo’s U.S. patent 6,992,180. On September 30, 2013, Enzo amended its list of accused products to include Prodesse, MilliPROBE, PACE and Procleix assays. The complaint seeks permanent injunctive relief and unspecified damages, and a trial is tentatively scheduled for the fall of 2015. At this time, based on available information regarding this litigation, the Company is unable to reasonably assess the ultimate outcome of this case or determine an estimate, or a range of estimates, of potential losses.

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On October 29, 2013, the Interlace stockholder representatives filed a complaint in the Delaware Court of Chancery alleging breach of contract for issues related to the payment of contingent consideration under the Interlace acquisition agreement, and are seeking $14.7 million in additional payments. The Company believes that Interlace has been paid all amounts due under the acquisition agreement and the claims are without merit. The Company is currently preparing its answer to the complaint. At this time, the Company is unable to reasonably assess the ultimate outcome of this case or determine an estimate, or range of estimates, of potential losses.

The Company is a party to various other legal proceedings and claims arising out of the ordinary course of its business. The Company believes that except for those described above there are no other proceedings or claims pending against it of which the ultimate resolution would have a material adverse effect on its financial condition or results of operations. In all cases, at each reporting period, the Company evaluates whether or not a potential loss amount or a potential range of loss is probable and reasonably estimable under ASC 450, Contingencies. Legal costs are expensed as incurred.

(6) Sale of Makena

In fiscal 2008, the Company sold the rights of its Makena (formerly Gestiva) pharmaceutical product to K-V Pharmaceutical Company (“KV”) upon FDA approval of the then pending Makena new drug application. The Company executed certain amendments to this agreement that resulted in an increase in the total sales price to $199.5 million and a change in the timing of when payments were due to the Company. On February 3, 2011, the Company received FDA approval of Makena, and all rights to Makena were transferred to KV. The Company had received scheduled payments as required under the agreement until August 2012 when KV and certain of its subsidiaries filed voluntary petitions for reorganization under Chapter 11 of Title 11 of the United States Code in the United States Bankruptcy Court. At that time, additional payments were still owed to the Company, and in December 2012 the Company and KV executed a settlement agreement, which released KV from all claims in consideration of a $60.0 million payment. The Company recorded this amount in the first quarter of fiscal 2013, net of certain costs, resulting in a gain of $53.9 million. The Company will receive no further payments from KV.

(7) Marketable Securities

The following reconciles the cost basis to the fair market value of the Company’s equity security that is classified as available-for-sale:

Period Ended: |  | Cost |  |  | Gross Unrealized Gains |  |  | Gross Unrealized Losses |  |  | Fair Value |
March 29, 2014 |  | $ | 5,931 |  |  | $ | 9,928 |  |  | $ | — |  |  | $ | 15,859 |
September 28, 2013 |  | $ | 5,931 |  |  | $ | 12,156 |  |  | $ | — |  |  | $ | 18,087 |

(8) Net Loss Per Share

A reconciliation of basic and diluted share amounts is as follows:

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | March 29, 2014 |  |  | March 30, 2013 |
Basic weighted average common shares outstanding |  |  | 274,589 |  |  |  | 268,175 |  |  |  | 273,648 |  |  |  | 267,259 |
Weighted average common stock equivalents from assumed exercise of stock options and restricted stock units |  |  | — |  |  |  | — |  |  |  | — |  |  |  | — |
Diluted weighted average common shares outstanding |  |  | 274,589 |  |  |  | 268,175 |  |  |  | 273,648 |  |  |  | 267,259 |
Weighted-average anti-dilutive shares related to: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Outstanding stock options |  |  | 7,950 |  |  |  | 8,081 |  |  |  | 7,575 |  |  |  | 9,104 |
Restricted stock units |  |  | 517 |  |  |  | 1,037 |  |  |  | 733 |  |  |  | 1,059 |

As more fully discussed in Note 4, the Company has outstanding Convertible Notes. The Company’s policy is to net share settle its Convertible Notes, and any conversion premium, at the Company’s option, may be satisfied by issuing shares of common stock, cash or a combination of shares and cash. For all periods presented, shares potentially issuable for the conversion premium of the Convertible Notes were excluded from the calculation of earnings per share as their effect would have been anti-dilutive.

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(9) Stock-Based Compensation

The following presents stock-based compensation expense in the Company’s Consolidated Statements of Operations:

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | March 29, 2014 |  |  | March 30, 2013 |
Cost of revenues |  | $ | 2,133 |  |  | $ | 1,723 |  |  | $ | 3,643 |  |  | $ | 3,557 |
Research and development |  |  | 2,224 |  |  |  | 2,015 |  |  |  | 4,097 |  |  |  | 3,883 |
Selling and marketing |  |  | 2,352 |  |  |  | 2,567 |  |  |  | 4,101 |  |  |  | 4,768 |
General and administrative |  |  | 5,663 |  |  |  | 5,739 |  |  |  | 9,496 |  |  |  | 11,680 |
Restructuring and divestiture |  |  | — |  |  |  | 6,969 |  |  |  | 4,761 |  |  |  | 7,191 |
|  | $ | 12,372 |  |  | $ | 19,013 |  |  | $ | 26,098 |  |  | $ | 31,079 |

The Company granted approximately 2.2 million stock options during the six months ended March 29, 2014 and March 30, 2013 with weighted-average exercise prices of $21.85 and $19.91, respectively. There were 11.1 million options outstanding at March 29, 2014 with a weighted-average exercise price of $19.89.

The Company uses a binomial model to determine the fair value of its stock options. The weighted-average assumptions utilized to value these stock options are indicated in the following table:

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | March 29, 2014 |  |  | March 30, 2013 |
Risk-free interest rate |  |  | 1.3 | % |  |  | 0.5 | % |  |  | 1.2 | % |  |  | 0.5 | %
Expected volatility |  |  | 41.4 | % |  |  | 43.7 | % |  |  | 41.4 | % |  |  | 43.7 | %
Expected life (in years) |  |  | 4.5 |  |  |  | 4.4 |  |  |  | 4.4 |  |  |  | 4.4 |
Dividend yield |  |  | — |  |  |  | — |  |  |  | — |  |  |  | — |
Weighted average fair value of options granted |  | $ | 7.82 |  |  | $ | 5.83 |  |  | $ | 7.65 |  |  | $ | 6.99 |

The Company granted approximately 2.3 million and 1.9 million restricted stock units (RSUs) during the six months ended March 29, 2014 and March 30, 2013, respectively, with weighted-average grant date fair values of $21.53 and $19.86, respectively. As of March 29, 2014, there were 4.1 million unvested RSUs outstanding with a weighted-average grant date fair value of $20.29. The Company granted approximately 0.4 million performance stock units (PSUs) in the first quarter of fiscal 2014 to members of its senior management team, which have a weighted-average grant date fair value of $21.77. Each recipient of the PSUs is eligible to receive between zero and 200% of the target number of shares of the Company’s common stock at the end of three years provided the Company’s defined Return on Invested Capital metrics are achieved. The Company is recognizing compensation expense ratably over the required service period based on its estimate that it is probable the targeted number of shares will vest. If there is a change in the estimate of the number of shares that are probable of vesting, the Company will cumulatively adjust compensation expense in the period that the change in estimate is made.

In connection with appointing its new President and Chief Executive Officer in December 2013, the Company granted approximately 0.1 million market stock units (MSUs). The MSUs vest in three separate tranches in an amount of 1/3rd of the total amount of the award based on the Company’s stock price meeting certain defined average stock prices for consecutive 30 trading day periods. These MSUs were valued at an average of $18.65 using the Monte Carlo simulation model and each tranche has its own derived service period. The Company is recognizing compensation expense under the accelerated method as prescribed by ASC 718, Compensation-Stock Compensation (ASC 718). In addition, per the terms of his employment agreement, the Company granted 0.2 million RSUs to match Mr. MacMillan’s purchase of 0.2 million shares of the Company’s common stock on the open market. The RSUs cliff vest three years from the date of grant, and the Company is accounting for this grant as a liability award pursuant to ASC 718 because this RSU award contains an additional vesting condition (the requirement that Mr. MacMillan retain the matching shares during the vesting period) that is not service, performance or market based.

At March 29, 2014, there was $32.2 million and $79.6 million of unrecognized compensation expense related to stock options and stock units (comprised of RSUs, MSUs and PSUs), respectively, to be recognized over a weighted-average period of 3.4 years and 3.0 years, respectively.

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(10) Other Balance Sheet Information

|  | March 29, 2014 |  |  | September 28, 2013 |
Inventories |  |  |  |  |  |  |  |
Raw materials |  | $ | 117,356 |  |  | $ | 115,575 |
Work-in-process |  |  | 59,635 |  |  |  | 51,171 |
Finished goods |  |  | 133,989 |  |  |  | 122,617 |
|  | $ | 310,980 |  |  | $ | 289,363 |
Property, plant and equipment |  |  |  |  |  |  |  |
Equipment and software |  | $ | 334,178 |  |  | $ | 318,473 |
Equipment under customer usage agreements |  |  | 282,177 |  |  |  | 275,696 |
Building and improvements |  |  | 173,930 |  |  |  | 171,469 |
Leasehold improvements |  |  | 62,734 |  |  |  | 68,159 |
Land |  |  | 51,662 |  |  |  | 51,633 |
Furniture and fixtures |  |  | 16,972 |  |  |  | 22,628 |
|  |  | 921,653 |  |  |  | 908,058 |
Less – accumulated depreciation and amortization |  |  | (449,499 | ) |  |  | (416,530 | )
|  | $ | 472,154 |  |  | $ | 491,528 |

(11) Business Segments and Geographic Information

The Company has four reportable segments: Diagnostics, Breast Health, GYN Surgical and Skeletal Health. Certain reportable segments represent an aggregation of operating units within each segment. The Company measures and evaluates its reportable segments based on segment revenues and operating income adjusted to exclude the effect of non-cash charges, such as intangible asset amortization expense, intangible asset and goodwill impairment charges, contingent consideration charges, acquisition related fair value adjustments and integration expenses, restructuring and divestiture charges and other one-time or unusual items and related tax effects.

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Identifiable assets for the four principal operating segments consist of inventories, intangible assets, goodwill, and property, plant and equipment. The Company fully allocates depreciation expense to its four reportable segments. The Company has presented all other identifiable assets as corporate assets. There were no intersegment revenues during the three and six months ended March 29, 2014 and March 30, 2013. Segment information is as follows:

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | March 29, 2014 |  |  | March 30, 2013 |
Total revenues: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Diagnostics |  | $ | 290,802 |  |  | $ | 296,507 |  |  | $ | 576,568 |  |  | $ | 602,423 |
Breast Health |  |  | 238,705 |  |  |  | 220,058 |  |  |  | 465,196 |  |  |  | 440,866 |
GYN Surgical |  |  | 72,043 |  |  |  | 73,692 |  |  |  | 150,897 |  |  |  | 154,601 |
Skeletal Health |  |  | 23,458 |  |  |  | 22,406 |  |  |  | 44,795 |  |  |  | 46,135 |
|  | $ | 625,008 |  |  | $ | 612,663 |  |  | $ | 1,237,456 |  |  | $ | 1,244,025 |
Operating income (loss): |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Diagnostics |  | $ | 15,243 |  |  | $ | (46,978 | ) |  | $ | 19,997 |  |  | $ | (32,683 | )
Breast Health |  |  | 25,818 |  |  |  | 47,892 |  |  |  | 69,667 |  |  |  | 92,837 |
GYN Surgical |  |  | 6,579 |  |  |  | 2,241 |  |  |  | 17,702 |  |  |  | 2,863 |
Skeletal Health |  |  | 2,610 |  |  |  | 2,387 |  |  |  | 4,169 |  |  |  | 5,754 |
|  | $ | 50,250 |  |  | $ | 5,542 |  |  | $ | 111,535 |  |  | $ | 68,771 |
Depreciation and amortization: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Diagnostics |  | $ | 94,612 |  |  | $ | 89,402 |  |  | $ | 186,798 |  |  | $ | 180,944 |
Breast Health |  |  | 9,163 |  |  |  | 10,124 |  |  |  | 18,524 |  |  |  | 20,054 |
GYN Surgical |  |  | 26,042 |  |  |  | 26,524 |  |  |  | 52,088 |  |  |  | 53,003 |
Skeletal Health |  |  | 227 |  |  |  | 226 |  |  |  | 453 |  |  |  | 430 |
|  | $ | 130,044 |  |  | $ | 126,276 |  |  | $ | 257,863 |  |  | $ | 254,431 |
Capital expenditures: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Diagnostics |  | $ | 14,841 |  |  | $ | 13,464 |  |  | $ | 25,097 |  |  | $ | 27,318 |
Breast Health |  |  | 2,275 |  |  |  | 5,910 |  |  |  | 4,080 |  |  |  | 9,490 |
GYN Surgical |  |  | 2,194 |  |  |  | 2,171 |  |  |  | 3,980 |  |  |  | 4,916 |
Skeletal Health |  |  | 40 |  |  |  | 28 |  |  |  | 182 |  |  |  | 206 |
Corporate |  |  | 2,006 |  |  |  | 2,823 |  |  |  | 4,402 |  |  |  | 4,913 |
|  | $ | 21,356 |  |  | $ | 24,396 |  |  | $ | 37,741 |  |  | $ | 46,843 |

|  | March 29, 2014 |  |  | September 28, 2013 |
Identifiable assets: |  |  |  |  |  |  |  |
Diagnostics |  | $ | 4,528,340 |  |  | $ | 4,667,942 |
Breast Health |  |  | 877,923 |  |  |  | 932,206 |
GYN Surgical |  |  | 1,802,207 |  |  |  | 1,849,518 |
Skeletal Health |  |  | 33,369 |  |  |  | 33,508 |
Corporate |  |  | 1,120,556 |  |  |  | 1,517,649 |
|  | $ | 8,362,395 |  |  | $ | 9,000,823 |

The Company had no customers with balances greater than 10% of accounts receivable as of March 29, 2014 or September 28, 2013, or any customer that represented greater than 10% of consolidated revenues during the three and six months ended March 29, 2014 and March 30, 2013.

The Company operates in the following major geographic areas as noted in the below chart. Revenue data is based upon customer location. Other than the United States, no single country accounted for more than 10% of consolidated revenues. The Company’s sales in Europe are predominantly derived from France, Germany and the United Kingdom. The Company’s sales in Asia-Pacific are predominantly derived from China, Australia and Japan. The “All others” designation includes Canada, Latin America and the Middle East.

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Revenues by geography as a percentage of total revenues were as follows:

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | March 29, 2014 |  |  | March 30, 2013 |
United States |  |  | 74% |  |  |  | 75% |  |  |  | 74% |  |  |  | 74% |
Europe |  |  | 15% |  |  |  | 12% |  |  |  | 15% |  |  |  | 14% |
Asia-Pacific |  |  | 7% |  |  |  | 9% |  |  |  | 7% |  |  |  | 8% |
All others |  |  | 4% |  |  |  | 4% |  |  |  | 4% |  |  |  | 4% |
|  |  | 100% |  |  |  | 100% |  |  |  | 100% |  |  |  | 100% |

(12) Income Taxes

In accordance with ASC 740, Income Taxes (ASC 740), each interim period is considered integral to the annual period and tax expense is measured using an estimated annual effective tax rate. An entity is required to record income tax expense each quarter based on its annual effective tax rate estimated for the full fiscal year and use that rate to provide for income taxes on a current year-to-date basis, adjusted for discrete taxable events that occur during the interim period. If, however, the entity is unable to reliably estimate its annual effective tax rate, then the actual effective tax rate for the year-to-date may be the best annual effective tax rate estimate. For the six months ended March 30, 2013, the Company determined that it was unable to make a reliable annual effective tax rate estimate due to the rate sensitivity as it related to its forecasted fiscal 2013 results. Therefore, the Company recorded a tax benefit for the six months ended March 30, 2013 based on the effective rate for the six months ended March 30, 2013.

The Company’s effective tax rate for the three and six month periods ended March 29, 2014 was a provision of 42.7% and 67.9%, respectively, on pre-tax losses, compared to a benefit of 30.7% and 40.8%, respectively, on pre-tax losses for the corresponding periods in the prior year. For the three and six months ended March 29, 2014, the effective tax rate differed from the statutory rate primarily due to unbenefited foreign losses. For the three months ended March 30, 2013, the tax rate benefit was less than the statutory rate primarily due to non-deductible contingent consideration expense related to TCT and Interlace, partially offset by the effect of the retroactively reinstated Federal research tax credit in the second quarter of fiscal 2013 and the domestic production activities deduction benefit. For the six months ended March 30, 2013, the tax rate benefit was higher than the statutory rate primarily due to a $19.0 million valuation allowance release related to capital losses which were utilized to offset capital gains generated during the year and the effect of the retroactively reinstated Federal Research tax credit in the second quarter of fiscal 2013, partially offset by non-deductible contingent consideration expense related to TCT and Interlace.

The Internal Revenue Service is examining the Company’s fiscal year 2011 consolidated federal income tax return and Gen-Probe’s consolidated federal income tax returns for calendar years 2010 through the 2012 acquisition date.

(13) Goodwill and Intangible Assets

Goodwill

A rollforward of goodwill activity by reportable segment from September 28, 2013 to March 29, 2014 is as follows:

|  | Diagnostics |  |  | Breast Health |  |  | GYN Surgical |  |  | Skeletal Health |  |  | Total |
Balance at September 28, 2013 |  | $ | 1,153,554 |  |  | $ | 636,365 |  |  | $ | 1,016,456 |  |  | $ | 8,153 |  |  | $ | 2,814,528 |
Disposition of a portion of a reporting unit |  |  | (221 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (221 | )
Tax adjustments |  |  | (323 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (323 | )
Foreign currency and other |  |  | (571 | ) |  |  | (3,292 | ) |  |  | (316 | ) |  |  | 9 |  |  |  | (4,170 | )
Balance at March 29, 2014 |  | $ | 1,152,439 |  |  | $ | 633,073 |  |  | $ | 1,016,140 |  |  | $ | 8,162 |  |  | $ | 2,809,814 |

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Intangible Assets

Intangible assets consisted of the following:

Description |  | As of March 29, 2014 |  |  | As of September 28, 2013 |
| Gross Carrying Value |  |  | Accumulated Amortization |  |  | Gross Carrying Value |  |  | Accumulated Amortization |
Developed technology |  | $ | 3,969,132 |  |  | $ | 1,237,076 |  |  | $ | 4,008,947 |  |  | $ | 1,094,435 |
In-process research and development |  |  | 23,000 |  |  |  | — |  |  |  | 24,000 |  |  |  | — |
Customer relationships and contracts |  |  | 1,101,860 |  |  |  | 340,541 |  |  |  | 1,101,870 |  |  |  | 296,481 |
Trade names |  |  | 236,846 |  |  |  | 92,183 |  |  |  | 238,103 |  |  |  | 81,844 |
Patents |  |  | 13,452 |  |  |  | 8,762 |  |  |  | 13,026 |  |  |  | 8,495 |
Business licenses |  |  | 2,607 |  |  |  | 738 |  |  |  | 2,647 |  |  |  | 616 |
Non-competition agreements |  |  | — |  |  |  | — |  |  |  | 296 |  |  |  | 296 |
|  | $ | 5,346,897 |  |  | $ | 1,679,300 |  |  | $ | 5,388,889 |  |  | $ | 1,482,167 |

The Company recorded impairment charges of $26.6 million and $0.5 million to developed technology and trade names, respectively, in the second quarter of fiscal 2014. In addition, the Company periodically re-evaluates the lives of its definite-lived intangible assets, and in the second quarter of fiscal 2014 shortened the life of certain corporate trade names, which will be phased out.

The estimated remaining amortization expense as of March 29, 2014 for each of the five succeeding fiscal years is as follows:

Remainder of Fiscal 2014 |  | $ | 229,551 |
Fiscal 2015 |  | $ | 403,348 |
Fiscal 2016 |  | $ | 374,672 |
Fiscal 2017 |  | $ | 365,541 |
Fiscal 2018 |  | $ | 355,044 |

(14) Product Warranties

Product warranty activity was as follows:

|  | Balance at Beginning of Period |  |  | Provisions |  |  | Settlements/ Adjustments |  |  | Balance at End of Period |
Six Months Ended: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
March 29, 2014 |  | $ | 9,258 |  |  | $ | 4,320 |  |  | $ | (5,058 | ) |  | $ | 8,520 |
March 30, 2013 |  | $ | 6,179 |  |  | $ | 5,328 |  |  | $ | (4,965 | ) |  | $ | 6,542 |

(15) New Accounting Pronouncements

In July 2013, the Financial Accounting Standards Board (FASB) issued Accounting Standards Update (ASU) No. 2013-11, Presentation of an Unrecognized Tax Benefit When a Net Operating Loss Carryforward, a Similar Tax Loss, or a Tax Credit Carryforward Exist. ASU 2013-11 amends the presentation requirements of ASC 740 and requires an unrecognized tax benefit to be presented in the financial statements as a reduction to a deferred tax asset for a net operating loss carryforward, similar tax loss, or a tax credit carryforward. To the extent the tax benefit is not available at the reporting date under the governing tax law or if the entity does not intend to use the deferred tax asset for such purpose, the unrecognized tax benefit should be presented as a liability and not combined with deferred tax assets. The ASU is effective for annual periods, and interim periods within those years, beginning after December 15, 2013, which is fiscal 2015 for the Company. The amendments are to be applied to all unrecognized tax benefits that exist as of the effective date and may be applied retrospectively to each prior reporting period presented. The Company is currently evaluating the impact of the adoption of ASU 2013-11 on its consolidated financial statements.

In April 2014, the FASB issued ASU 2014-08, Presentation of Financial Statements (Topic 205) and Property, Plant, and Equipment (Topic 360): Reporting Discontinued Operations and Disclosures of Disposals of Components of an Entity, which amends the guidance for reporting discontinued operations and disposals of components of an entity. The amended guidance requires that a disposal representing a strategic shift in operations, such as a disposal of a major line of business or geographic area, that has (or will have) a major effect on an entity’s financial results should be reported as discontinued operations. ASU 2014-08 also expands the disclosure requirements for discontinued operations and adds new disclosures for individually significant dispositions that do not qualify as discontinued operations. ASU 2014-08 is effective prospectively for fiscal years, and interim reporting periods within those

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years, beginning after December 15, 2014 (early adoption is permitted only for disposals that have not been previously reported). The implementation of ASU 2014-08 is not expected to have a material impact on the Company’s consolidated financial position or results of operations.

(16) Supplemental Guarantor Condensed Consolidating Financials

The Company’s Senior Notes are fully and unconditionally and jointly and severally guaranteed by Hologic, Inc. (“Parent/Issuer”) and certain of its domestic subsidiaries, which are 100% owned by Hologic, Inc. The following represents the supplemental condensed financial information of Hologic, Inc. and its guarantor and non-guarantor subsidiaries, as of March 29, 2014 and September 28, 2013 and for the three and six months ended March 29, 2014 and March 30, 2013, as applicable.

SUPPLEMENTAL CONDENSED CONSOLIDATING STATEMENT OF OPERATIONS

For the Three Months Ended March 29, 2014

|  | Parent/Issuer |  |  | Guarantor Subsidiaries |  |  | Non-Guarantor Subsidiaries |  |  | Eliminations |  |  | Consolidated |
Revenues: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Product |  | $ | 122,938 |  |  | $ | 385,989 |  |  | $ | 121,579 |  |  | $ | (109,371 | ) |  | $ | 521,135 |
Service and other |  |  | 88,608 |  |  |  | 17,068 |  |  |  | 12,342 |  |  |  | (14,145 | ) |  |  | 103,873 |
|  |  | 211,546 |  |  |  | 403,057 |  |  |  | 133,921 |  |  |  | (123,516 | ) |  |  | 625,008 |
Costs of revenues: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Product |  |  | 58,047 |  |  |  | 145,665 |  |  |  | 91,383 |  |  |  | (109,371 | ) |  |  | 185,724 |
Amortization of intangible assets |  |  | 1,397 |  |  |  | 74,619 |  |  |  | 867 |  |  |  | — |  |  |  | 76,883 |
Impairment of intangible assets |  |  | — |  |  |  | — |  |  |  | 26,567 |  |  |  | — |  |  |  | 26,567 |
Service and other |  |  | 51,109 |  |  |  | 13,893 |  |  |  | 2,865 |  |  |  | (14,145 | ) |  |  | 53,722 |
Gross Profit |  |  | 100,993 |  |  |  | 168,880 |  |  |  | 12,239 |  |  |  | — |  |  |  | 282,112 |
Operating expenses: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Research and development |  |  | 7,695 |  |  |  | 39,997 |  |  |  | 2,223 |  |  |  | — |  |  |  | 49,915 |
Selling and marketing |  |  | 17,857 |  |  |  | 40,532 |  |  |  | 20,268 |  |  |  | — |  |  |  | 78,657 |
General and administrative |  |  | 15,137 |  |  |  | 35,530 |  |  |  | 11,442 |  |  |  | — |  |  |  | 62,109 |
Amortization of intangible assets |  |  | 1,115 |  |  |  | 26,865 |  |  |  | 1,120 |  |  |  | — |  |  |  | 29,100 |
Impairment of intangible assets |  |  | — |  |  |  | — |  |  |  | 522 |  |  |  | — |  |  |  | 522 |
Restructuring and divestiture charges |  |  | 1,656 |  |  |  | 2,331 |  |  |  | 7,572 |  |  |  | — |  |  |  | 11,559 |
|  |  | 43,460 |  |  |  | 145,255 |  |  |  | 43,147 |  |  |  | — |  |  |  | 231,862 |
Income (loss) from operations |  |  | 57,533 |  |  |  | 23,625 |  |  |  | (30,908 | ) |  |  | — |  |  |  | 50,250 |
Interest income |  |  | 103 |  |  |  | 901 |  |  |  | 297 |  |  |  | (1,152 | ) |  |  | 149 |
Interest expense |  |  | (54,692 | ) |  |  | (308 | ) |  |  | (601 | ) |  |  | 1,152 |  |  |  | (54,449 | )
Debt extinguishment loss |  |  | (4,437 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (4,437 | )
Other expense, net |  |  | (2,938 | ) |  |  | (186 | ) |  |  | (139 | ) |  |  | — |  |  |  | (3,263 | )
(Loss) income before income taxes |  |  | (4,431 | ) |  |  | 24,032 |  |  |  | (31,351 | ) |  |  | — |  |  |  | (11,750 | )
Provision (benefit) for income taxes |  |  | (1,753 | ) |  |  | 4,664 |  |  |  | 2,104 |  |  |  | — |  |  |  | 5,015 |
Equity in earnings (losses) of subsidiaries |  |  | (14,087 | ) |  |  | 1,028 |  |  |  | — |  |  |  | 13,059 |  |  |  | — |
Net (loss) income |  | $ | (16,765 | ) |  | $ | 20,396 |  |  | $ | (33,455 | ) |  | $ | 13,059 |  |  | $ | (16,765 | )

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SUPPLEMENTAL CONDENSED CONSOLIDATING STATEMENT OF OPERATIONS

For the Six Months Ended March 29, 2014

|  | Parent/Issuer |  |  | Guarantor Subsidiaries |  |  | Non-Guarantor Subsidiaries |  |  | Eliminations |  |  | Consolidated |
Revenues: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Product |  | $ | 228,394 |  |  | $ | 767,557 |  |  | $ | 247,982 |  |  | $ | (210,416 | ) |  | $ | 1,033,517 |
Service and other |  |  | 174,554 |  |  |  | 32,941 |  |  |  | 24,086 |  |  |  | (27,642 | ) |  |  | 203,939 |
|  |  | 402,948 |  |  |  | 800,498 |  |  |  | 272,068 |  |  |  | (238,058 | ) |  |  | 1,237,456 |
Costs of revenues: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Product |  |  | 110,920 |  |  |  | 284,425 |  |  |  | 177,673 |  |  |  | (210,416 | ) |  |  | 362,602 |
Amortization of intangible assets |  |  | 2,794 |  |  |  | 148,728 |  |  |  | 2,027 |  |  |  | — |  |  |  | 153,549 |
Impairment of intangible assets |  |  | — |  |  |  | — |  |  |  | 26,567 |  |  |  | — |  |  |  | 26,567 |
Service and other |  |  | 93,429 |  |  |  | 21,535 |  |  |  | 19,708 |  |  |  | (27,642 | ) |  |  | 107,030 |
Gross Profit |  |  | 195,805 |  |  |  | 345,810 |  |  |  | 46,093 |  |  |  | — |  |  |  | 587,708 |
Operating expenses: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Research and development |  |  | 15,212 |  |  |  | 78,848 |  |  |  | 4,524 |  |  |  | — |  |  |  | 98,584 |
Selling and marketing |  |  | 35,783 |  |  |  | 83,307 |  |  |  | 42,824 |  |  |  | — |  |  |  | 161,914 |
General and administrative |  |  | 29,793 |  |  |  | 77,024 |  |  |  | 23,111 |  |  |  | — |  |  |  | 129,928 |
Amortization of intangible assets |  |  | 1,894 |  |  |  | 51,028 |  |  |  | 2,394 |  |  |  | — |  |  |  | 55,316 |
Impairment of intangible assets |  |  | — |  |  |  | — |  |  |  | 522 |  |  |  | — |  |  |  | 522 |
Restructuring and divestiture charges |  |  | 6,646 |  |  |  | 12,087 |  |  |  | 11,176 |  |  |  | — |  |  |  | 29,909 |
|  |  | 89,328 |  |  |  | 302,294 |  |  |  | 84,551 |  |  |  | — |  |  |  | 476,173 |
Income (loss) from operations |  |  | 106,477 |  |  |  | 43,516 |  |  |  | (38,458 | ) |  |  | — |  |  |  | 111,535 |
Interest income |  |  | 202 |  |  |  | 1,206 |  |  |  | 491 |  |  |  | (1,394 | ) |  |  | 505 |
Interest expense |  |  | (115,346 | ) |  |  | (616 | ) |  |  | (1,171 | ) |  |  | 1,394 |  |  |  | (115,739 | )
Debt extinguishment loss |  |  | (7,377 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (7,377 | )
Other (expense) income, net |  |  | 6,627 |  |  |  | (9,530 | ) |  |  | 810 |  |  |  | — |  |  |  | (2,093 | )
(Loss) income before income taxes |  |  | (9,417 | ) |  |  | 34,576 |  |  |  | (38,328 | ) |  |  | — |  |  |  | (13,169 | )
Provision (benefit) for income taxes |  |  | (1,812 | ) |  |  | 6,224 |  |  |  | 4,535 |  |  |  | — |  |  |  | 8,947 |
Equity in earnings (losses) of subsidiaries |  |  | (14,511 | ) |  |  | 11,116 |  |  |  | — |  |  |  | 3,395 |  |  |  | — |
Net (loss) income |  | $ | (22,116 | ) |  | $ | 39,468 |  |  | $ | (42,863 | ) |  | $ | 3,395 |  |  | $ | (22,116 | )

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SUPPLEMENTAL CONDENSED CONSOLIDATING STATEMENT OF OPERATIONS

For the Three Months Ended March 30, 2013

|  | Parent/Issuer |  |  | Guarantor Subsidiaries |  |  | Non-Guarantor Subsidiaries |  |  | Eliminations |  |  | Consolidated |
Revenues: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Product |  | $ | 100,614 |  |  | $ | 396,913 |  |  | $ | 121,340 |  |  | $ | (102,751 | ) |  | $ | 516,116 |
Service and other |  |  | 81,176 |  |  |  | 21,320 |  |  |  | 9,535 |  |  |  | (15,484 | ) |  |  | 96,547 |
|  |  | 181,790 |  |  |  | 418,233 |  |  |  | 130,875 |  |  |  | (118,235 | ) |  |  | 612,663 |
Costs of revenues: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Product |  |  | 52,488 |  |  |  | 169,259 |  |  |  | 88,231 |  |  |  | (102,751 | ) |  |  | 207,227 |
Amortization of intangible assets |  |  | 1,309 |  |  |  | 73,374 |  |  |  | 1,050 |  |  |  | — |  |  |  | 75,733 |
Service and other |  |  | 40,620 |  |  |  | 16,828 |  |  |  | 8,413 |  |  |  | (15,484 | ) |  |  | 50,377 |
Gross profit |  |  | 87,373 |  |  |  | 158,772 |  |  |  | 33,181 |  |  |  | — |  |  |  | 279,326 |
Operating expenses: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Research and development |  |  | 7,234 |  |  |  | 39,973 |  |  |  | 2,414 |  |  |  | — |  |  |  | 49,621 |
Selling and marketing |  |  | 20,484 |  |  |  | 45,237 |  |  |  | 22,893 |  |  |  | — |  |  |  | 88,614 |
General and administrative |  |  | 16,716 |  |  |  | 38,631 |  |  |  | 8,886 |  |  |  | — |  |  |  | 64,233 |
Amortization of intangible assets |  |  | 777 |  |  |  | 26,687 |  |  |  | 1,203 |  |  |  | — |  |  |  | 28,667 |
Contingent consideration – compensation expense |  |  | 29,388 |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 29,388 |
Contingent consideration – fair value adjustments |  |  | 799 |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 799 |
Restructuring and divestiture charges |  |  | 164 |  |  |  | 10,600 |  |  |  | 3,092 |  |  |  | (1,394 | ) |  |  | 12,462 |
|  |  | 75,562 |  |  |  | 161,128 |  |  |  | 38,488 |  |  |  | (1,394 | ) |  |  | 273,784 |
Income (loss) from operations |  |  | 11,811 |  |  |  | (2,356 | ) |  |  | (5,307 | ) |  |  | 1,394 |  |  |  | 5,542 |
Interest income |  |  | 99 |  |  |  | 36 |  |  |  | 72 |  |  |  | — |  |  |  | 207 |
Interest expense |  |  | (75,238 | ) |  |  | (309 | ) |  |  | (502 | ) |  |  | — |  |  |  | (76,049 | )
Debt extinguishment loss |  |  | (3,247 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (3,247 | )
Other (expense) income, net |  |  | 1,638 |  |  |  | (3,073 | ) |  |  | 1,247 |  |  |  | (13 | ) |  |  | (201 | )
(Loss) income before income taxes |  |  | (64,937 | ) |  |  | (5,702 | ) |  |  | (4,490 | ) |  |  | 1,381 |  |  |  | (73,748 | )
(Benefit) provision for income taxes |  |  | (14,842 | ) |  |  | (8,081 | ) |  |  | 279 |  |  |  | — |  |  |  | (22,644 | )
Equity in earnings (losses) of subsidiaries |  |  | (1,009 | ) |  |  | 2,459 |  |  |  | — |  |  |  | (1,450 | ) |  |  | — |
Net (loss) income |  | $ | (51,104 | ) |  | $ | 4,838 |  |  | $ | (4,769 | ) |  | $ | (69 | ) |  | $ | (51,104 | )

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SUPPLEMENTAL CONDENSED CONSOLIDATING STATEMENT OF OPERATIONS

For the Six Months Ended March 30, 2013

|  | Parent/Issuer |  |  | Guarantor Subsidiaries |  |  | Non-Guarantor Subsidiaries |  |  | Eliminations |  |  | Consolidated |
Revenues: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Product |  | $ | 198,657 |  |  | $ | 774,736 |  |  | $ | 254,415 |  |  | $ | (178,438 | ) |  | $ | 1,049,370 |
Service and other |  |  | 159,136 |  |  |  | 44,409 |  |  |  | 19,407 |  |  |  | (28,297 | ) |  |  | 194,655 |
|  |  | 357,793 |  |  |  | 819,145 |  |  |  | 273,822 |  |  |  | (206,735 | ) |  |  | 1,244,025 |
Costs of revenues: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Product |  |  | 106,008 |  |  |  | 331,988 |  |  |  | 169,996 |  |  |  | (178,438 | ) |  |  | 429,554 |
Amortization of intangible assets |  |  | 2,615 |  |  |  | 146,291 |  |  |  | 2,114 |  |  |  | — |  |  |  | 151,020 |
Service and other |  |  | 78,998 |  |  |  | 33,585 |  |  |  | 18,166 |  |  |  | (28,297 | ) |  |  | 102,452 |
Gross profit |  |  | 170,172 |  |  |  | 307,281 |  |  |  | 83,546 |  |  |  | — |  |  |  | 560,999 |
Operating expenses: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Research and development |  |  | 14,652 |  |  |  | 81,726 |  |  |  | 4,752 |  |  |  | — |  |  |  | 101,130 |
Selling and marketing |  |  | 41,257 |  |  |  | 92,602 |  |  |  | 49,198 |  |  |  | — |  |  |  | 183,057 |
General and administrative |  |  | 32,036 |  |  |  | 69,647 |  |  |  | 16,941 |  |  |  | — |  |  |  | 118,624 |
Amortization of intangible assets |  |  | 1,455 |  |  |  | 53,336 |  |  |  | 2,402 |  |  |  | — |  |  |  | 57,193 |
Contingent consideration – compensation expense |  |  | 58,874 |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 58,874 |
Contingent consideration – fair value adjustments |  |  | 10,839 |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 10,839 |
Gain on sale of intellectual property |  |  | — |  |  |  | (53,884 | ) |  |  | — |  |  |  | — |  |  |  | (53,884 | )
Restructuring and divestiture charges |  |  | 385 |  |  |  | 13,886 |  |  |  | 3,518 |  |  |  | (1,394 | ) |  |  | 16,395 |
|  |  | 159,498 |  |  |  | 257,313 |  |  |  | 76,811 |  |  |  | (1,394 | ) |  |  | 492,228 |
Income from operations |  |  | 10,674 |  |  |  | 49,968 |  |  |  | 6,735 |  |  |  | 1,394 |  |  |  | 68,771 |
Interest income |  |  | 230 |  |  |  | 78 |  |  |  | 159 |  |  |  | — |  |  |  | 467 |
Interest expense |  |  | (146,492 | ) |  |  | (623 | ) |  |  | (1,015 | ) |  |  | — |  |  |  | (148,130 | )
Debt extinguishment loss |  |  | (3,247 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (3,247 | )
Other income (expense), net |  |  | 1,757 |  |  |  | (7,119 | ) |  |  | 6,427 |  |  |  | (27 | ) |  |  | 1,038 |
(Loss) income before income taxes |  |  | (137,078 | ) |  |  | 42,304 |  |  |  | 12,306 |  |  |  | 1,367 |  |  |  | (81,101 | )
(Benefit) provision for income taxes |  |  | (26,589 | ) |  |  | (11,195 | ) |  |  | 4,669 |  |  |  | — |  |  |  | (33,115 | )
Equity in earnings (losses) of subsidiaries |  |  | 62,503 |  |  |  | 13,393 |  |  |  | — |  |  |  | (75,896 | ) |  |  | — |
Net (loss) income |  | $ | (47,986 | ) |  | $ | 66,892 |  |  | $ | 7,637 |  |  | $ | (74,529 | ) |  | $ | (47,986 | )

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SUPPLEMENTAL CONDENSED CONSOLIDATING STATEMENTS OF COMPREHENSIVE (LOSS) INCOME

For the Three Months Ended March 29, 2014

|  | Parent/Issuer |  |  | Guarantor Subsidiaries |  |  | Non-Guarantor Subsidiaries |  |  | Eliminations |  |  | Consolidated |
Net (loss) income |  | $ | (16,765 | ) |  | $ | 20,396 |  |  | $ | (33,455 | ) |  | $ | 13,059 |  |  | $ | (16,765 | )
Changes in foreign currency translation adjustment |  |  | — |  |  |  | 26 |  |  |  | (5,789 | ) |  |  | — |  |  |  | (5,763 | )
Changes in unrealized holding gain on available-for-sale securities |  |  | — |  |  |  | (1,048 | ) |  |  | — |  |  |  | — |  |  |  | (1,048 | )
Comprehensive (loss) income |  | $ | (16,765 | ) |  | $ | 19,374 |  |  | $ | (39,244 | ) |  | $ | 13,059 |  |  | $ | (23,576 | )

For the Six Months Ended March 29, 2014

|  | Parent/Issuer |  |  | Guarantor Subsidiaries |  |  | Non-Guarantor Subsidiaries |  |  | Eliminations |  |  | Consolidated |
Net (loss) income |  | $ | (22,116 | ) |  | $ | 39,468 |  |  | $ | (42,863 | ) |  | $ | 3,395 |  |  | $ | (22,116 | )
Changes in foreign currency translation adjustment |  |  | — |  |  |  | 115 |  |  |  | (7,066 | ) |  |  | — |  |  |  | (6,951 | )
Changes in unrealized holding gain on available-for-sale securities |  |  | — |  |  |  | (2,228 | ) |  |  | — |  |  |  | — |  |  |  | (2,228 | )
Changes in pension plans, net of taxes |  |  | — |  |  |  | — |  |  |  | (615 | ) |  |  | — |  |  |  | (615 | )
Comprehensive (loss) income |  | $ | (22,116 | ) |  | $ | 37,355 |  |  | $ | (50,544 | ) |  | $ | 3,395 |  |  | $ | (31,910 | )

For the Three Months Ended March 30, 2013

|  | Parent/Issuer |  |  | Guarantor Subsidiaries |  |  | Non-Guarantor Subsidiaries |  |  | Eliminations |  |  | Consolidated |
Net (loss) income |  | $ | (51,104 | ) |  | $ | 4,838 |  |  | $ | (4,769 | ) |  | $ | (69 | ) |  | $ | (51,104 | )
Changes in foreign currency translation adjustment |  |  | — |  |  |  | (341 | ) |  |  | (7,947 | ) |  |  | — |  |  |  | (8,288 | )
Changes in unrealized holding gain on available-for-sale securities |  |  | — |  |  |  | 2,687 |  |  |  | — |  |  |  | — |  |  |  | 2,687 |
Comprehensive (loss) income |  | $ | (51,104 | ) |  | $ | 7,184 |  |  | $ | (12,716 | ) |  | $ | (69 | ) |  | $ | (56,705 | )

For the Six Months Ended March 30, 2013

|  | Parent/Issuer |  |  | Guarantor Subsidiaries |  |  | Non-Guarantor Subsidiaries |  |  | Eliminations |  |  | Consolidated |
Net (loss) income |  | $ | (47,986 | ) |  | $ | 66,892 |  |  | $ | 7,637 |  |  | $ | (74,529 | ) |  | $ | (47,986 | )
Changes in foreign currency translation adjustment |  |  | — |  |  |  | 236 |  |  |  | (6,555 | ) |  |  | — |  |  |  | (6,319 | )
Changes in unrealized holding gain on available-for-sale securities |  |  | — |  |  |  | 2,130 |  |  |  | — |  |  |  | — |  |  |  | 2,130 |
Comprehensive (loss) income |  | $ | (47,986 | ) |  | $ | 69,258 |  |  | $ | 1,082 |  |  | $ | (74,529 | ) |  | $ | (52,175 | )

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##### Table of Contents

SUPPLEMENTAL CONDENSED CONSOLIDATING BALANCE SHEET

March 29, 2014

|  | Parent/ Issuer |  |  | Guarantor Subsidiaries |  |  | Non-Guarantor Subsidiaries |  |  | Eliminations |  |  | Consolidated |
ASSETS |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Current assets: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Cash and cash equivalents |  | $ | 139,343 |  |  | $ | 242,863 |  |  | $ | 102,316 |  |  | $ | — |  |  | $ | 484,522 |
Restricted cash |  |  | — |  |  |  | — |  |  |  | 5,857 |  |  |  | — |  |  |  | 5,857 |
Accounts receivable, net |  |  | 108,850 |  |  |  | 177,540 |  |  |  | 101,243 |  |  |  | — |  |  |  | 387,633 |
Inventories |  |  | 83,479 |  |  |  | 172,075 |  |  |  | 55,426 |  |  |  | — |  |  |  | 310,980 |
Deferred income tax assets |  |  | 14,907 |  |  |  | 18,591 |  |  |  | 900 |  |  |  | — |  |  |  | 34,398 |
Prepaid income taxes |  |  | — |  |  |  | 2,583 |  |  |  | 957 |  |  |  | (3,540 | ) |  |  | — |
Prepaid expenses and other current assets |  |  | 19,252 |  |  |  | 13,445 |  |  |  | 8,473 |  |  |  | — |  |  |  | 41,170 |
Intercompany receivables |  |  | — |  |  |  | 2,576,516 |  |  |  | 47,579 |  |  |  | (2,624,095 | ) |  |  | — |
Total current assets |  |  | 365,831 |  |  |  | 3,203,613 |  |  |  | 322,751 |  |  |  | (2,627,635 | ) |  |  | 1,264,560 |
Property, plant and equipment, net |  |  | 28,596 |  |  |  | 343,091 |  |  |  | 100,467 |  |  |  | — |  |  |  | 472,154 |
Intangible assets, net |  |  | 16,011 |  |  |  | 3,585,729 |  |  |  | 65,857 |  |  |  | — |  |  |  | 3,667,597 |
Goodwill |  |  | 282,448 |  |  |  | 2,391,294 |  |  |  | 136,072 |  |  |  | — |  |  |  | 2,809,814 |
Other assets |  |  | 98,195 |  |  |  | 48,226 |  |  |  | 1,849 |  |  |  | — |  |  |  | 148,270 |
Long term intercompany receivables |  |  | — |  |  |  | 144,000 |  |  |  | — |  |  |  | (144,000 | ) |  |  | — |
Investment in subsidiaries |  |  | 8,648,043 |  |  |  | 199,081 |  |  |  | 280 |  |  |  | (8,847,404 | ) |  |  | — |
Total assets |  | $ | 9,439,124 |  |  | $ | 9,915,034 |  |  | $ | 627,276 |  |  | $ | (11,619,039 | ) |  | $ | 8,362,395 |
LIABILITIES AND STOCKHOLDERS’ EQUITY |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Current liabilities: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Current portion of long-term debt |  | $ | 89,497 |  |  | $ | — |  |  | $ | — |  |  | $ | — |  |  | $ | 89,497 |
Accounts payable |  |  | 27,969 |  |  |  | 29,867 |  |  |  | 10,361 |  |  |  | — |  |  |  | 68,197 |
Accrued expenses |  |  | 136,690 |  |  |  | 67,889 |  |  |  | 47,515 |  |  |  | (3,807 | ) |  |  | 248,287 |
Deferred revenue |  |  | 105,712 |  |  |  | 8,062 |  |  |  | 30,928 |  |  |  | — |  |  |  | 144,702 |
Intercompany payables |  |  | 2,576,709 |  |  |  | — |  |  |  | 50,145 |  |  |  | (2,626,854 | ) |  |  | — |
Total current liabilities |  |  | 2,936,577 |  |  |  | 105,818 |  |  |  | 138,949 |  |  |  | (2,630,661 | ) |  |  | 550,683 |
Long-term debt, net of current portion |  |  | 4,183,958 |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 4,183,958 |
Deferred income tax liabilities |  |  | 78,567 |  |  |  | 1,361,467 |  |  |  | 10,308 |  |  |  | — |  |  |  | 1,450,342 |
Deferred service obligations – long-term |  |  | 8,855 |  |  |  | 3,750 |  |  |  | 9,853 |  |  |  | — |  |  |  | 22,458 |
Long-term intercompany payables |  |  | 144,000 |  |  |  | — |  |  |  | — |  |  |  | (144,000 | ) |  |  | — |
Other long-term liabilities |  |  | 107,064 |  |  |  | 32,844 |  |  |  | 34,943 |  |  |  | — |  |  |  | 174,851 |
Total stockholders’ equity |  |  | 1,980,103 |  |  |  | 8,411,155 |  |  |  | 433,223 |  |  |  | (8,844,378 | ) |  |  | 1,980,103 |
Total liabilities and stockholders’ equity |  | $ | 9,439,124 |  |  | $ | 9,915,034 |  |  | $ | 627,276 |  |  | $ | (11,619,039 | ) |  | $ | 8,362,395 |

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SUPPLEMENTAL CONDENSED CONSOLIDATING BALANCE SHEET

September 28, 2013

|  | Parent/ Issuer |  |  | Guarantor Subsidiaries |  |  | Non-Guarantor Subsidiaries |  |  | Eliminations |  |  | Consolidated |
ASSETS |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Current assets: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Cash and cash equivalents |  | $ | 321,523 |  |  | $ | 387,422 |  |  | $ | 113,545 |  |  | $ | — |  |  | $ | 822,490 |
Restricted cash |  |  | — |  |  |  | — |  |  |  | 6,914 |  |  |  | — |  |  |  | 6,914 |
Accounts receivable, net |  |  | 126,036 |  |  |  | 174,433 |  |  |  | 108,804 |  |  |  | — |  |  |  | 409,273 |
Inventories |  |  | 81,924 |  |  |  | 146,678 |  |  |  | 60,761 |  |  |  | — |  |  |  | 289,363 |
Deferred income tax assets |  |  | — |  |  |  | 19,042 |  |  |  | 494 |  |  |  | (19,536 | ) |  |  | — |
Prepaid income taxes |  |  | 47,131 |  |  |  | 2,303 |  |  |  | — |  |  |  | (4,689 | ) |  |  | 44,745 |
Prepaid expenses and other current assets |  |  | 16,246 |  |  |  | 21,112 |  |  |  | 11,003 |  |  |  | — |  |  |  | 48,361 |
Intercompany receivables |  |  | — |  |  |  | 2,442,502 |  |  |  | 31,949 |  |  |  | (2,474,451 | ) |  |  | — |
Other current assets – assets held-for-sale |  |  | — |  |  |  | — |  |  |  | 2,997 |  |  |  | — |  |  |  | 2,997 |
Total current assets |  |  | 592,860 |  |  |  | 3,193,492 |  |  |  | 336,467 |  |  |  | (2,498,676 | ) |  |  | 1,624,143 |
Property, plant and equipment, net |  |  | 29,313 |  |  |  | 356,736 |  |  |  | 105,479 |  |  |  | — |  |  |  | 491,528 |
Intangible assets, net |  |  | 19,925 |  |  |  | 3,784,987 |  |  |  | 101,810 |  |  |  | — |  |  |  | 3,906,722 |
Goodwill |  |  | 283,038 |  |  |  | 2,390,939 |  |  |  | 140,551 |  |  |  | — |  |  |  | 2,814,528 |
Other assets |  |  | 103,548 |  |  |  | 58,446 |  |  |  | 1,908 |  |  |  | — |  |  |  | 163,902 |
Investments in subsidiaries |  |  | 8,667,620 |  |  |  | 129,016 |  |  |  | 2,296 |  |  |  | (8,798,932 | ) |  |  | — |
Total assets |  | $ | 9,696,304 |  |  | $ | 9,913,616 |  |  | $ | 688,511 |  |  | $ | (11,297,608 | ) |  | $ | 9,000,823 |
LIABILITIES AND STOCKHOLDERS’ EQUITY |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Current liabilities: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Current portion of long-term debt |  | $ | 563,812 |  |  | $ | — |  |  | $ | — |  |  | $ | — |  |  | $ | 563,812 |
Accounts payable |  |  | 27,865 |  |  |  | 42,661 |  |  |  | 10,008 |  |  |  | — |  |  |  | 80,534 |
Accrued expenses |  |  | 152,950 |  |  |  | 79,629 |  |  |  | 44,319 |  |  |  | (4,967 | ) |  |  | 271,931 |
Deferred revenue |  |  | 93,306 |  |  |  | 7,958 |  |  |  | 31,055 |  |  |  | — |  |  |  | 132,319 |
Deferred income tax liabilities |  |  | 59,346 |  |  |  | — |  |  |  | — |  |  |  | (19,536 | ) |  |  | 39,810 |
Intercompany payables |  |  | 2,418,089 |  |  |  | — |  |  |  | 64,411 |  |  |  | (2,482,500 | ) |  |  | — |
Total current liabilities |  |  | 3,315,368 |  |  |  | 130,248 |  |  |  | 149,793 |  |  |  | (2,507,003 | ) |  |  | 1,088,406 |
Long-term debt, net of current portion |  |  | 4,242,098 |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 4,242,098 |
Deferred income tax liabilities |  |  | 89,085 |  |  |  | 1,435,522 |  |  |  | 10,699 |  |  |  | — |  |  |  | 1,535,306 |
Deferred service obligations – long-term |  |  | 11,251 |  |  |  | 3,511 |  |  |  | 12,864 |  |  |  | (2,170 | ) |  |  | 25,456 |
Other long-term liabilities |  |  | 96,990 |  |  |  | 37,598 |  |  |  | 33,456 |  |  |  | — |  |  |  | 168,044 |
Total stockholders’ equity |  |  | 1,941,512 |  |  |  | 8,306,737 |  |  |  | 481,699 |  |  |  | (8,788,435 | ) |  |  | 1,941,513 |
Total liabilities and stockholders’ equity |  | $ | 9,696,304 |  |  | $ | 9,913,616 |  |  | $ | 688,511 |  |  | $ | (11,297,608 | ) |  | $ | 9,000,823 |

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CONSOLIDATING STATEMENT OF CASH FLOWS

For the Six Months Ended March 29, 2014

|  | Parent/ Issuer |  |  | Guarantor Subsidiaries |  |  | Non-Guarantor Subsidiaries |  |  | Eliminations |  |  | Consolidated |
OPERATING ACTIVITIES |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Net cash provided by (used in) operating activities |  | $ | 343,410 |  |  | $ | (122,511 | ) |  | $ | (2,584 | ) |  | $ | — |  |  | $ | 218,315 |
INVESTING ACTIVITIES |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Proceeds from sale of business, net |  |  | — |  |  |  | — |  |  |  | 2,431 |  |  |  | — |  |  |  | 2,431 |
Purchase of property and equipment |  |  | (5,643 | ) |  |  | (9,635 | ) |  |  | (4,499 | ) |  |  | — |  |  |  | (19,777 | )
Increase in equipment under customer usage agreements |  |  | (453 | ) |  |  | (10,546 | ) |  |  | (6,965 | ) |  |  | — |  |  |  | (17,964 | )
Net sales of insurance contracts |  |  | 13,841 |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 13,841 |
Purchases of mutual funds |  |  | (29,732 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (29,732 | )
Sales of mutual funds |  |  | 18,564 |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 18,564 |
(Increase) decrease in other assets |  |  | (945 | ) |  |  | (1,981 | ) |  |  | 994 |  |  |  | — |  |  |  | (1,932 | )
Net cash used in investing activities |  |  | (4,368 | ) |  |  | (22,162 | ) |  |  | (8,039 | ) |  |  | — |  |  |  | (34,569 | )
FINANCING ACTIVITIES |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Repayment of long-term debt |  |  | (562,500 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (562,500 | )
Payment of debt issuance costs |  |  | (2,446 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (2,446 | )
Payment of deferred acquisition consideration |  |  | (4,965 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (4,965 | )
Net proceeds from issuance of common stock pursuant to employee stock plans |  |  | 53,718 |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 53,718 |
Excess tax benefit related to equity awards |  |  | 4,134 |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 4,134 |
Payment of minimum tax withholdings on net share settlement of equity awards |  |  | (9,163 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (9,163 | )
Net cash used in financing activities |  |  | (521,222 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (521,222 | )
Effect of exchange rate changes on cash and cash equivalents |  |  | — |  |  |  | 114 |  |  |  | (606 | ) |  |  | — |  |  |  | (492 | )
Net decrease in cash and cash equivalents |  |  | (182,180 | ) |  |  | (144,559 | ) |  |  | (11,229 | ) |  |  | — |  |  |  | (337,968 | )
Cash and cash equivalents, beginning of period |  |  | 321,523 |  |  |  | 387,422 |  |  |  | 113,545 |  |  |  | — |  |  |  | 822,490 |
Cash and cash equivalents, end of period |  | $ | 139,343 |  |  | $ | 242,863 |  |  | $ | 102,316 |  |  | $ | — |  |  | $ | 484,522 |

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CONSOLIDATING STATEMENT OF CASH FLOWS

For the Six Months Ended March 30, 2013

|  | Parent/ Issuer |  |  | Guarantor Subsidiaries |  |  | Non-Guarantor Subsidiaries |  |  | Eliminations |  |  | Consolidated |
OPERATING ACTIVITIES |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Net cash provided by operating activities |  | $ | 65,009 |  |  | $ | 72,387 |  |  | $ | 32,132 |  |  | $ | — |  |  | $ | 169,528 |
INVESTING ACTIVITIES |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Acquisition of a business |  |  | (3,698 | ) |  |  | — |  |  |  | (220 | ) |  |  | — |  |  |  | (3,918 | )
Payment of additional acquisition consideration |  |  | (16,808 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (16,808 | )
Proceeds from sale of business, net of cash transferred |  |  | — |  |  |  | 84,762 |  |  |  | 1,488 |  |  |  | — |  |  |  | 86,250 |
Purchase of property and equipment |  |  | (6,397 | ) |  |  | (14,335 | ) |  |  | (5,156 | ) |  |  | — |  |  |  | (25,888 | )
Increase in equipment under customer usage agreements |  |  | (335 | ) |  |  | (13,031 | ) |  |  | (7,589 | ) |  |  | — |  |  |  | (20,955 | )
Purchase of insurance contracts |  |  | (4,000 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (4,000 | )
Proceeds from sale of intellectual property |  |  | — |  |  |  | 60,000 |  |  |  | — |  |  |  | — |  |  |  | 60,000 |
Purchase of cost-method investments |  |  | (3,400 | ) |  |  | (225 | ) |  |  | — |  |  |  | — |  |  |  | (3,625 | )
Increase in other assets |  |  | (1,984 | ) |  |  | (1,520 | ) |  |  | (1,447 | ) |  |  | — |  |  |  | (4,951 | )
Net cash provided by (used in) investing activities |  |  | (36,622 | ) |  |  | 115,651 |  |  |  | (12,924 | ) |  |  | — |  |  |  | 66,105 |
FINANCING ACTIVITIES |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Repayment of long-term debt |  |  | (32,500 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (32,500 | )
Payment of debt issuance cost |  |  | (7,019 | ) |  |  |  |  |  |  |  |  |  |  |  |  |  |  | (7,019 | )
Payment of contingent consideration |  |  | (42,433 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (42,433 | )
Net proceeds from issuance of common stock pursuant to employee stock plans |  |  | 37,623 |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 37,623 |
Excess tax benefit related to equity awards |  |  | 4,437 |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 4,437 |
Payment of minimum tax withholdings on net share settlements of equity awards |  |  | (9,972 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (9,972 | )
Net cash used in financing activities |  |  | (49,864 | ) |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (49,864 | )
Effect of exchange rate changes on cash and cash equivalents |  |  | — |  |  |  | (1,782 | ) |  |  | 579 |  |  |  | — |  |  |  | (1,203 | )
Net increase (decrease) in cash and cash equivalents |  |  | (21,477 | ) |  |  | 186,256 |  |  |  | 19,787 |  |  |  | — |  |  |  | 184,566 |
Cash and cash equivalents, beginning of period |  |  | 210,028 |  |  |  | 269,416 |  |  |  | 80,986 |  |  |  | — |  |  |  | 560,430 |
Cash and cash equivalents, end of period |  | $ | 188,551 |  |  | $ | 455,672 |  |  | $ | 100,773 |  |  | $ | — |  |  | $ | 744,996 |

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Item 2. | Management’s Discussion and Analysis of Financial Condition and Results of Operations

CAUTIONARY STATEMENT

Some of the statements contained in this report are forward-looking statements within the meaning of Section 27A of the Securities Act of 1933 and Section 21E of the Securities Exchange Act of 1934. These statements involve known and unknown risks, uncertainties and other factors which may cause our or our industry’s actual results, performance or achievements to be materially different from any future results, performance or achievements expressed or implied by the forward-looking statements. Forward-looking statements include, but are not limited to, statements regarding:

| • |  | the effect of the continuing worldwide macroeconomic uncertainty on our business and results of operations;

| • |  | the coverage and reimbursement decisions of third-party payors and the guidelines, recommendations, and studies published by various organizations relating to the use of our products and treatments;

| • |  | the uncertainty of the impact of cost containment efforts and federal healthcare reform legislation on our business and results of operations;

| • |  | the ability to successfully manage ongoing organizational and strategic changes, including our ability to attract, motivate and retain key employees;

| • |  | the impact and anticipated benefits of recently completed acquisitions and acquisitions we may complete in the future;

| • |  | the ability to consolidate certain of our manufacturing and other operations on a timely basis and within budget, without disrupting our business and to achieve anticipated cost synergies related to such actions;

| • |  | our goal of expanding our market positions;

| • |  | the development of new competitive technologies and products;

| • |  | regulatory approvals and clearances for our products;

| • |  | production schedules for our products;

| • |  | the anticipated development of our markets and the success of our products in these markets;

| • |  | the anticipated performance and benefits of our products;

| • |  | business strategies;

| • |  | estimated asset and liability values;

| • |  | the impact and costs and expenses of any litigation we may be subject to now or in the future;

| • |  | our compliance with covenants contained in our indebtedness;

| • |  | anticipated trends relating to our financial condition or results of operations; and

| • |  | our capital resources and the adequacy thereof.

In some cases, you can identify forward-looking statements by terms such as “may,” “will,” “should,” “could,” “would,” “expects,” “plans,” “anticipates,” “believes,” “estimates,” “projects,” “predicts,” “potential” and similar expressions intended to identify forward-looking statements. These statements are only predictions and involve known and unknown risks, uncertainties, and other factors that may cause our actual results, levels of activity, performance, or achievements to be materially different from any future results, levels of activity, performance, or achievements expressed or implied by such forward-looking statements. Given these uncertainties, you should not place undue reliance on these forward-looking statements. Also, these forward-looking statements represent our estimates and assumptions only as of the date of this report. Except as otherwise required by law, we expressly disclaim any obligation or undertaking to release publicly any updates or revisions to any forward-looking statement contained in this report to reflect any change in our expectations or any change in events, conditions or circumstances on which any of our forward-looking statements are based. Factors that could cause or contribute to differences in our future financial results include the cautionary statements set forth herein and in our other filings with the Securities and Exchange Commission, including those set forth under Part I, Item 1A, “Risk Factors” in our Annual Report on Form 10-K for the fiscal year ended September 28, 2013. We qualify all of our forward-looking statements by these cautionary statements.

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OVERVIEW

We are a leading developer, manufacturer and supplier of premium diagnostics products, medical imaging systems and surgical products with an emphasis on serving the healthcare needs of women. Our core business units are focused on diagnostics, breast health, GYN surgical and skeletal health. We sell and service our products through a combination of direct sales and service forces and a network of independent distributors and sales representatives.

We offer a wide range of diagnostic products which are used primarily to aid in the diagnosis of human diseases and screen donated human blood. Our molecular diagnostic products include our Aptima family of assays based on our Transcription-Mediated-Amplification, or TMA, technology, our Cervista products based on our proprietary Invader chemistry and our advanced instrumentation (Panther and Tigris). The Aptima family of assays is used to detect the infectious microorganisms that cause the common sexually transmitted diseases, or STDs, chlamydia and gonorrhea, certain high-risk strains of human papillomavirus, or HPV, and Trichomonas vaginalis, the parasite that causes trichomoniasis. Our Invader chemistry is comprised of molecular diagnostic reagents used for a variety of DNA and RNA analysis applications, including our Cervista HPV high risk, or HR, and Cervista HPV 16/18 products to assist in the diagnosis of HPV, as well as other products to diagnose cystic fibrosis, cardiovascular risk and other diseases. Our diagnostics products also include the ThinPrep System, which is primarily used in cytology applications such as cervical cancer screening, and the Rapid Fetal Fibronectin Test, which assists physicians in assessing the risk of pre-term birth. In blood screening, we develop and manufacture the Procleix family of assays, which are used to detect Human Immunodeficiency Virus, or HIV, the Hepatitis C Virus, or HCV, the Hepatitis B Virus, or HBV, the West Nile Virus, or WNV, the Hepatitis A Virus, or HAV, and Parvovirus, in donated human blood. These blood screening products are marketed worldwide by our blood screening collaborator, Grifols, S.A., or Grifols, under Grifols’ trademarks. In January 2014, Grifols completed its acquisition of the blood screening business of Novartis Vaccines and Diagnostics, Inc.

Our breast health products include a broad portfolio of breast imaging and related products and accessories, including digital and film-based mammography systems, magnetic resonance imaging, or MRI, breast coils, computer-aided detection, or CAD, for mammography and minimally invasive breast biopsy devices, breast biopsy site markers, breast biopsy guidance systems, breast imaging comfort pads, and breast brachytherapy products. Our most advanced breast imaging platform, Dimensions, utilizes a technology called tomosynthesis to produce 3D images, as well as conventional 2D full field digital mammography images.

Our GYN surgical products include our NovaSure Endometrial Ablation System, or NovaSure, and our MyoSure Hysteroscopic Tissue Removal System, or MyoSure. The NovaSure system involves a trans-cervical procedure for the treatment of abnormal uterine bleeding. The MyoSure system is a tissue removal device that is designed to provide incision-less removal of fibroids and polyps within the uterus.

Our skeletal health products include dual-energy X-ray bone densitometry systems, an ultrasound-based osteoporosis assessment product, and our Fluoroscan mini C-arm imaging products.

Unless the context otherwise requires, references to we, us, Hologic or our company refer to Hologic, Inc. and its consolidated subsidiaries.

Trademark Notice

Hologic is a trademark of Hologic, Inc. Other trademarks, logos, and slogans registered or used by Hologic and its divisions and subsidiaries in the United States and other countries include, but are not limited to, the following: Affirm, Aptima, Aptima Combo 2, Aquilex, ATEC, Celero, Cervista, Contura, C-View, Dimensions, Eviva, Fluoroscan, Gen-Probe, Healthcome, HTA, Horizon Interlace, Invader, LORAD, MammoPad, MammoSite, MultiCare, MyoSure, NovaSure, Panther, Prodesse, PreservCyt, QDR, Rapid fFN, Sahara, SecurView, Selenia, Sentinelle, Serenity, StereoLoc, TCT, ThinPrep, THS, Tigris, TLI IQ, and Trident.

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RESULTS OF OPERATIONS

All dollar amounts in tables are presented in thousands.

Product Revenues

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |  |  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |
|  | Amount |  |  | % of Total Revenue |  |  | Amount |  |  | % of Total Revenue |  |  | Amount |  |  | % |  |  | Amount |  |  | % of Total Revenue |  |  | Amount |  |  | % of Total Revenue |  |  | Amount |  |  | % |
Product Revenues |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Diagnostics |  | $ | 283,598 |  |  |  | 45% |  |  | $ | 288,836 |  |  |  | 47% |  |  | $ | (5,238) |  |  |  | (2)% |  |  | $ | 561,952 |  |  |  | 45% |  |  | $ | 583,426 |  |  |  | 47% |  |  | $ | (21,474) |  |  |  | (4)% |
Breast Health |  |  | 149,529 |  |  |  | 24% |  |  |  | 138,340 |  |  |  | 23% |  |  |  | 11,189 |  |  |  | 8% |  |  |  | 290,513 |  |  |  | 23% |  |  |  | 279,617 |  |  |  | 22% |  |  |  | 10,896 |  |  |  | 4% |
GYN Surgical |  |  | 71,737 |  |  |  | 11% |  |  |  | 73,372 |  |  |  | 12% |  |  |  | (1,635) |  |  |  | (2)% |  |  |  | 150,248 |  |  |  | 12% |  |  |  | 153,928 |  |  |  | 12% |  |  |  | (3,680) |  |  |  | (2)% |
Skeletal Health |  |  | 16,271 |  |  |  | 3% |  |  |  | 15,568 |  |  |  | 3% |  |  |  | 703 |  |  |  | 5% |  |  |  | 30,804 |  |  |  | 2% |  |  |  | 32,399 |  |  |  | 3% |  |  |  | (1,595) |  |  |  | (5)% |
|  | $ | 521,135 |  |  |  | 83% |  |  | $ | 516,116 |  |  |  | 84% |  |  | $ | 5,019 |  |  |  | 1% |  |  | $ | 1,033,517 |  |  |  | 84% |  |  | $ | 1,049,370 |  |  |  | 84% |  |  | $ | (15,853) |  |  |  | (2)% |

Diagnostics product revenues decreased 2% and 4% in the current three and six month periods compared to the corresponding periods in the prior year. These decreases were primarily due to the divestiture of our Lifecodes business in the second quarter of fiscal 2013, which had contributed $10.6 million and $23.1 million in the three and six months ended March 30, 2013, respectively, a reduction in ThinPrep revenues of $6.9 million and $19.5 million in the three and six months ended March 29, 2014, respectively, and a reduction in Prodesse (principally flu testing assays) revenues of $2.4 million and $5.6 million in the three and six months ended March 29, 2014, respectively. Partially offsetting these declines were an increase in blood screening revenues of $10.4 million and $19.7 million in the three and six months ended March 29, 2014, respectively, and a $4.7 million and $11.9 million increase from our molecular diagnostics products, primarily our Aptima family of assays.

We attribute the reduction in ThinPrep revenues primarily to lower domestic sales volumes resulting from an increase in screening intervals based on guidelines released in 2012 by the American Congress of Obstetrics and Gynecologists and the U.S. Preventative Services Task Force and lower average sales prices internationally, primarily in China where we have transitioned to selling more of our products through distributors, partially offset by higher sales volumes internationally. Prodesse revenues decreased in the current year periods primarily due to a milder flu season this year compared to the corresponding periods in the prior year and the recent introduction of competitive products. Our blood screening revenues increased primarily due to the inclusion of contingent revenue under our blood screening collaboration that was not recognized in the first quarter of fiscal 2013, and to a lesser extent the second quarter of fiscal 2013, due to unbilled accounts receivable being recorded as a fair value adjustment in purchase accounting. Under the collaboration, a portion of our blood screening revenue is contingent on donations testing revenue earned by our blood screening collaborator. As a result, amounts to be received for this contingent revenue related to inventory on hand and not yet utilized by Novartis’ (our blood screening collaborator at the time) customers as of the date we acquired Gen-Probe were recorded as unbilled accounts receivable on the balance sheet in purchase accounting and these amounts were not recorded as revenue in our results of operations in fiscal 2013. This increase in blood screening revenues was partially offset by lower WNV assay sales compared to the corresponding periods in fiscal 2013 as last year generally had a much higher incidence of the WNV resulting in higher donation testing in the prior year periods. The increase in revenues related to our Aptima family of assays was primarily due to increased volumes from our strategic alliance with Quest Diagnostics Incorporated entered into in the third quarter of fiscal 2013, and increased sales volumes of our HPV screening assay, which was FDA approved for use on our Panther system in the fourth quarter of fiscal 2013. These increases were partially offset by slightly lower average sales prices for our Aptima products due to increased competitive pressures.

Breast Health product revenues increased 8% and 4% in the current three and six month periods compared to the corresponding periods in the prior year. In the current three and six month periods, our digital mammography systems revenue increased $11.5 million and $13.4 million, respectively, compared to the corresponding periods in the prior year primarily due to the increase in 3D Dimensions revenue of $15.9 million and $24.2 million, respectively, as we sold more units with slightly higher average sales prices in the United States, and to a lesser extent internationally. As expected, we continue to experience a decline in the number of Selenia units sold as well as slightly lower average sales prices for our 2D Dimensions products partially due to configuration differences. We also experienced an increase in revenues for our workstation and related products of $2.6 million and $3.0 million, respectively, in the current year periods, which is partially driven by our C-View product. In addition, our breast biopsy products revenue increased $2.2 million in the current six month period compared to the corresponding period in the prior year primarily due to the increase in the number of Eviva biopsy devices sold worldwide. Recent adverse changes in the reimbursement for our breast biopsy products may result in lower sales prices, or use, of such products in the future. Partially offsetting the increases in the current six month period, we experienced a decline in our analog mammography systems and MRI breast coils.

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GYN Surgical product revenues decreased 2% in both the current three and six month periods compared to the corresponding periods in the prior year primarily due to a decline in sales of NovaSure devices of $5.5 million and $12.8 million, respectively, partially offset by a $4.1 million and $9.5 million increase in MyoSure system sales in the current year periods, respectively. We experienced a decrease in the number of NovaSure devices sold in the United States, which we continue to believe is primarily attributable to patients delaying surgery or opting for lower cost and generally less effective alternatives. The MyoSure system continues to gain strong market acceptance as unit sales increase.

Skeletal Health product revenues increased 5% in the current quarter compared to the corresponding period in the prior year and decreased 5% in the current six months compared to the corresponding period in the prior year. The increase in the current quarter was primarily due to an increase in our mini C-arm systems and our osteoporosis assessment product sales, namely our Horizon product, which was introduced in late fiscal 2013, partially offset by lower volumes of our older Discovery products and pricing pressures. The decrease in the current six month period compared to the prior year corresponding period was primarily due to a reduction in unit sales of our Discovery products and to a lesser extent our mini C-arm systems and pricing pressures, partially offset by higher Horizon unit sales.

Product revenues by geography as a percentage of total product sales were as follows:

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | March 29, 2014 |  |  | March 30, 2013 |
United States |  |  | 73% |  |  |  | 74% |  |  |  | 73% |  |  |  | 73% |
Europe |  |  | 16% |  |  |  | 13% |  |  |  | 15% |  |  |  | 14% |
Asia-Pacific |  |  | 8% |  |  |  | 9% |  |  |  | 8% |  |  |  | 9% |
All others |  |  | 3% |  |  |  | 4% |  |  |  | 4% |  |  |  | 4% |
|  |  | 100% |  |  |  | 100% |  |  |  | 100% |  |  |  | 100% |

The increase in product revenues as a percentage of consolidated product revenues in Europe in the current quarter compared to the corresponding period in the prior year was primarily due to an increase in blood screening revenues.

Service and Other Revenues

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |  |  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |
|  | Amount |  |  | % of Total Revenue |  |  | Amount |  |  | % of Total Revenue |  |  | Amount |  |  | % |  |  | Amount |  |  | % of Total Revenue |  |  | Amount |  |  | % of Total Revenue |  |  | Amount |  |  | % |
Service and Other Revenues |  | $ | 103,873 |  |  |  | 17% |  |  | $ | 96,547 |  |  |  | 16% |  |  | $ | 7,326 |  |  |  | 8% |  |  | $ | 203,939 |  |  |  | 16% |  |  | $ | 194,655 |  |  |  | 16% |  |  | $ | 9,284 |  |  |  | 5% |

Service and other revenues are primarily comprised of revenue generated from our field service organization to provide ongoing service, installation and repair of our products. The majority of these revenues are generated within our Breast Health segment. Service and other revenues increased 8% and 5% in the current three and six month periods, respectively, compared to the corresponding periods in the prior year primarily due to an increase in the number of service contracts in our Breast Health business driven by an increase in the installed base of our digital mammography systems, an increase in services not covered by service contracts and higher training revenues on our digital mammography systems.

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Cost of Product Revenues

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |  |  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |
|  | Amount |  |  | % of Product Revenue |  |  | Amount |  |  | % of Product Revenue |  |  | Amount |  |  | % |  |  | Amount |  |  | % of Product Revenue |  |  | Amount |  |  | % of Product Revenue |  |  | Amount |  |  | % |
Cost of Product Revenues |  | $ | 185,724 |  |  |  | 36% |  |  | $ | 207,227 |  |  |  | 40% |  |  | $ | (21,503 | ) |  |  | (10)% |  |  | $ | 362,602 |  |  |  | 35% |  |  | $ | 429,554 |  |  |  | 41% |  |  | $ | (66,952 | ) |  |  | (16)% |
Amortization of Intangible Assets |  |  | 76,883 |  |  |  | 15% |  |  |  | 75,733 |  |  |  | 15% |  |  |  | 1,150 |  |  |  | 2% |  |  |  | 153,549 |  |  |  | 15% |  |  |  | 151,020 |  |  |  | 14% |  |  |  | 2,529 |  |  |  | 2% |
Impairment of Intangible Assets |  |  | 26,567 |  |  |  | 5% |  |  |  | — |  |  |  | — |  |  |  | 26,567 |  |  |  | 100% |  |  |  | 26,567 |  |  |  | 3% |  |  |  | — |  |  |  | — |  |  |  | 26,567 |  |  |  | 100% |
|  | $ | 289,174 |  |  |  | 55% |  |  | $ | 282,960 |  |  |  | 55% |  |  | $ | 6,214 |  |  |  | 2% |  |  | $ | 542,718 |  |  |  | 53% |  |  | $ | 580,574 |  |  |  | 55% |  |  | $ | (37,856 | ) |  |  | (7)% |

Product revenues gross margin remained flat at 45% in the current quarter compared to the prior year corresponding period and improved in the current six month period to 47% compared to 45% in the corresponding period in the prior year.

Cost of Product Revenues. The cost of product revenues, excluding amortization and impairment of intangible assets, as a percentage of product revenues was 36% and 35% in the current three and six month periods, respectively, compared to 40% and 41% in the corresponding periods in the prior year. Cost of product revenues as a percentage of product sales in the current year periods decreased in Diagnostics, Breast Health, and GYN Surgical and increased in Skeletal Health compared to the corresponding periods in the prior year, resulting in an overall improved gross margin rate.

Diagnostics’ product costs as a percentage of revenue declined in the current three and six month periods compared to the corresponding periods in the prior year primarily due to the inclusion in the corresponding periods in fiscal 2013 of $22.5 million and $52.4 million, respectively, of additional costs related to the sale of acquired inventory written up to fair value in purchase accounting for the Gen-Probe acquisition. In addition, we were able to recognize contingent revenue under the blood screening collaboration in fiscal 2014 that we were not able to recognize in the corresponding fiscal 2013 periods, although to a lesser extent relative to the second quarter of fiscal 2013, as described above. Furthermore, we experienced favorable manufacturing variances across our products and lower royalty costs for ThinPrep, partially offset by unfavorable pricing on ThinPrep and Aptima sales and increased service costs for placed instruments.

Breast Health’s product costs as a percentage of revenue declined in the current three and six month periods compared to the corresponding periods in the prior year primarily due to the increase in 3D Dimensions sales on both a unit basis and as a percentage of total digital mammography systems sales compared to our 2D systems. Our 3D Dimensions systems have higher average sales prices than our 2D systems resulting in higher gross margins.

GYN Surgical’s product costs as a percentage of revenue declined slightly in the current three and six month periods compared to the corresponding periods in the prior year primarily due to lower overhead at the Costa Rica facility allocated to these products as a result of the transfer of our breast biopsy products from our Indianapolis, Indiana facility during fiscal 2013. In addition, we experienced favorable manufacturing variances in the current year periods, partially offset by the impact of lower NovaSure volumes and higher MyoSure volumes. Our NovaSure systems have a higher gross margin than our MyoSure products.

Skeletal Health’s product costs as a percentage of revenue increased in the current three and six month periods primarily due to lower unit sales and increased pricing pressures compared to the prior year periods.

Amortization of Intangible Assets. Amortization of intangible assets relates to acquired developed technology and patents. These intangible assets are generally amortized over their estimated useful lives of between 8.5 and 20 years using a straight-line method or, if reliably determinable, based on the pattern in which the economic benefits of the assets are expected to be consumed. The economic pattern is based on undiscounted future cash flows. The increase in amortization expense in the current three and six month periods compared to the corresponding period in the prior year was primarily due to certain in-process research and development projects recorded as assets in the Gen-Probe acquisition receiving FDA approval in fiscal 2013. As a result, these approved projects are now being amortized.

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Impairment of Intangible Assets. In the second quarter of fiscal 2014, we evaluated our MRI breast coils product line asset group, which is within our Breast Health segment, for impairment due to our current expectation that it will be sold or disposed of significantly before the end of its previously estimated useful life. The undiscounted cash flows expected to be generated by this asset group over its estimated remaining life were not sufficient to recover its carrying value. We have estimated the fair value of the asset group resulting in an aggregate impairment charge of $28.6 million, comprised of $27.1 million of intangible assets and $1.5 million of property and equipment. The impairment charge has been allocated to the long-lived assets, resulting in $26.6 million being allocated to developed technology. The estimated fair value of this asset group is subject to change and additional charges may be recorded in the future. For additional information, please refer to Note 2 to the consolidated financial statements contained in Part I, Item 1 of this Quarterly Report.

Cost of Service and Other Revenues

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |  |  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |
|  | Amount |  |  | % of Service Revenue |  |  | Amount |  |  | % of Service Revenue |  |  | Amount |  |  | % |  |  | Amount |  |  | % of Service Revenue |  |  | Amount |  |  | % of Service Revenue |  |  | Amount |  |  | % |
Cost of Service and Other Revenue |  | $ | 53,722 |  |  |  | 52% |  |  | $ | 50,377 |  |  |  | 52% |  |  | $ | 3,345 |  |  |  | 7% |  |  | $ | 107,030 |  |  |  | 52% |  |  | $ | 102,452 |  |  |  | 53% |  |  | $ | 4,578 |  |  |  | 5% |

Service and other revenues gross margin was 48% in both the current three and six month periods compared to 48% and 47% in the corresponding periods in the prior year. Within our Breast Health segment, the continued conversion of a high percentage of our domestic installed base of digital mammography systems to service contracts upon expiration of the warranty period without a corresponding increase in costs to service these contracts has resulted in higher gross margins. Partially offsetting this improvement is increased costs in our Diagnostics segment coupled with lower other revenues, which includes royalty revenue.

Operating Expenses

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |  |  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |
|  | Amount |  |  | % of Total Revenue |  |  | Amount |  |  | % of Total Revenue |  |  | Amount |  |  | % |  |  | Amount |  |  | % of Total Revenue |  |  | Amount |  |  | % of Total Revenue |  |  | Amount |  |  | % |
Operating Expenses |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Research and development |  | $ | 49,915 |  |  |  | 8% |  |  | $ | 49,621 |  |  |  | 8% |  |  | $ | 294 |  |  |  | 1% |  |  | $ | 98,584 |  |  |  | 8% |  |  | $ | 101,130 |  |  |  | 8% |  |  | $ | (2,546 | ) |  |  | (3)% |
Selling and marketing |  |  | 78,657 |  |  |  | 13% |  |  |  | 88,614 |  |  |  | 14% |  |  |  | (9,957 | ) |  |  | (11)% |  |  |  | 161,914 |  |  |  | 13% |  |  |  | 183,057 |  |  |  | 15% |  |  |  | (21,143 | ) |  |  | (12)% |
General and administrative |  |  | 62,109 |  |  |  | 10% |  |  |  | 64,233 |  |  |  | 10% |  |  |  | (2,124 | ) |  |  | (3)% |  |  |  | 129,928 |  |  |  | 11% |  |  |  | 118,624 |  |  |  | 10% |  |  |  | 11,304 |  |  |  | 10% |
Amortization of intangible assets |  |  | 29,100 |  |  |  | 5% |  |  |  | 28,667 |  |  |  | 5% |  |  |  | 433 |  |  |  | 2% |  |  |  | 55,316 |  |  |  | 5% |  |  |  | 57,193 |  |  |  | 5% |  |  |  | (1,877 | ) |  |  | (3)% |
Impairment of intangible assets |  |  | 522 |  |  |  | 0% |  |  |  | — |  |  |  | — |  |  |  | 522 |  |  |  | 100% |  |  |  | 522 |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | 522 |  |  |  | 100% |
Contingent consideration – compensation expense |  |  | — |  |  |  | — |  |  |  | 29,388 |  |  |  | 5% |  |  |  | (29,388 | ) |  |  | (100)% |  |  |  | — |  |  |  | — |  |  |  | 58,874 |  |  |  | 5% |  |  |  | (58,874 | ) |  |  | (100)% |
Contingent consideration – fair value adjustments |  |  | — |  |  |  | — |  |  |  | 799 |  |  |  | 0% |  |  |  | (799 | ) |  |  | (100)% |  |  |  | — |  |  |  | — |  |  |  | 10,839 |  |  |  | 1% |  |  |  | (10,839 | ) |  |  | (100)% |
Gain on sale of intellectual property |  |  | — |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | — |  |  |  | (53,884 | ) |  |  | (4)% |  |  |  | 53,884 |  |  |  | 100% |
Restructuring and divestiture charges |  |  | 11,559 |  |  |  | 2% |  |  |  | 12,462 |  |  |  | 2% |  |  |  | (903 | ) |  |  | (7)% |  |  |  | 29,909 |  |  |  | 2% |  |  |  | 16,395 |  |  |  | 1% |  |  |  | 13,514 |  |  |  | 82% |
|  | $ | 231,862 |  |  |  | 37% |  |  | $ | 273,784 |  |  |  | 45% |  |  | $ | (41,922 | ) |  |  | (15)% |  |  | $ | 476,173 |  |  |  | 38% |  |  | $ | 492,228 |  |  |  | 40% |  |  | $ | (16,055 | ) |  |  | (14)% |

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Research and Development Expenses. Research and development expenses increased 1% in the current quarter compared to the corresponding period in the prior year and decreased 3% in the current six month period compared to the corresponding period in the prior year. The increase in the current quarter compared to the prior year period was primarily due to an increase in compensation from higher bonus expense, increased clinical spending for our next generation breast biopsy products, and additional program spend for our virology product line, partially offset by lower headcount and reductions to certain development programs, primarily in the GYN Surgical business as part of our cost containment measures implemented in fiscal 2013 and the beginning of the first quarter of fiscal 2014. In addition, we divested our Lifecodes business in the second quarter of fiscal 2013, and as such we had no research and development expenses in fiscal 2014 related to this business compared to $2.0 million in the second quarter of fiscal 2013. The decrease in the current six month period compared to the corresponding period in the prior year was primarily due to the divestiture of Lifecodes, which contributed $4.2 million in the prior year period, and lower headcount and reductions to certain development programs primarily in the GYN Surgical business. Partially offsetting these decreases was additional program spend for our virology product line, increased clinical spending for our next generation breast biopsy products, and higher bonus expense. Research and development primarily reflects spending on new product development programs, regulatory compliance and clinical research and trials. At any point in time, we have a number of different research projects and clinical trials being conducted and the timing of these projects and related costs can vary from period to period.

Selling and Marketing Expenses. Selling and marketing expenses decreased 11% and 12% in the current three and six month periods, respectively, compared to the corresponding periods in the prior year primarily due to lower headcount and lower spend for certain marketing directives, such as trade shows, seminars, and medical education, primarily as a result of our cost containment measures, and lower distributor commissions. In addition, the three and six month periods ended March 30, 2013 included $2.3 million and $4.6 million, respectively, of expenses related to Lifecodes. These decreases were partially offset by higher bonus expense.

General and Administrative Expenses. General and administrative expenses decreased 3% in the current quarter compared to the corresponding period in the prior year and increased 10% in the current six month period compared to the corresponding period in the prior year. The decrease in the current quarter compared to the corresponding period in the prior year was primarily due to lower compensation and benefit costs due to lower headcount from our cost containment measures, lower integration costs related to the Gen-Probe acquisition, and a decrease in medical device excise taxes of $1.1 million, partially offset by higher bonus expense and a property and equipment impairment of $1.2 million, which is discussed above. The increase in the current six month period compared to the corresponding period in the prior year was primarily due to legal and consulting fees of $4.7 million incurred in the first quarter of fiscal 2014 to assist us in our negotiation and response to shareholder activism, an increase in the medical device excise tax of $4.3 million and higher bonus expense, partially offset by lower compensation and benefit costs due to lower headcount from our cost containment measures and lower integration costs related to the Gen-Probe acquisition. In addition, the first quarter of fiscal 2013 included a legal settlement benefit.

Amortization of Intangible Assets. Amortization of intangible assets results from customer relationships, trade names, business licenses and non-compete agreements related to our acquisitions. These intangible assets are generally amortized over their estimated useful lives of between 2 and 30 years using a straight-line method or, if reliably determinable, based on the pattern in which the economic benefits of the assets are expected to be consumed utilizing expected undiscounted future cash flows. The increase in the current quarter compared to the corresponding period in the prior year was primarily due to shortening the remaining life of certain corporate trade names as we decided to phase out their use during the second quarter of fiscal 2014. The decrease in the current six month period compared to the corresponding period in the prior year was primarily due to lower amortization from intangibles acquired in the Cytyc, Inc. acquisition in fiscal 2008 as the pattern of economic benefits decreases, partially offset by accelerated amortization of corporate trade names.

Impairment of Intangible Assets. In the second quarter of fiscal 2014, we recorded an impairment charge for a trade name intangible asset related to our MRI breast coils product line as discussed above.

Contingent Consideration—Compensation Expense. In connection with our acquisition of TCT International Co., Ltd., or TCT, we were obligated to make contingent earn-out payments. The payments were contingent on future employment and were also based on achieving certain incremental revenue growth milestones. The measurement period ended in fiscal 2013, and as such, there were no charges in fiscal 2014.

Contingent Consideration—Fair Value Adjustments. In connection with our acquisition of Interlace Medical, Inc., or Interlace, we were required to pay future consideration that was contingent on achieving certain revenue based milestones. As of the acquisition date, we recorded a contingent consideration liability for the estimated fair value of the amount we expected to pay to the former shareholders of Interlace. This liability was based on future revenue projections of the business under various potential scenarios and weighted probability assumptions of these outcomes. The $10.0 million charge in the first quarter of fiscal 2013 was due to an increase in the liability as a result of higher projected revenues for the Interlace products, and the $0.8 million charge in the second quarter of fiscal 2013 was due to the accretion of the liability to the measurement date. The measurement period for this contingent consideration ended in the second quarter of fiscal 2013, and as such, there were no charges in fiscal 2014.

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Gain on Sale of Intellectual Property. In the first quarter of fiscal 2013, we recorded a net gain of $53.9 million related to the sale of our Makena asset to K-V Pharmaceutical Company, or KV. On August 4, 2012, KV and certain of its subsidiaries filed voluntary petitions for reorganization under Chapter 11 of Title 11 of the United States Code in the United States Bankruptcy Court for the Southern District of New York. At that time, KV still owed us $95.0 million. In December 2012, we and KV executed a settlement, which released KV from all claims in consideration of a $60.0 million payment. We recorded this payment, net of certain costs in the first quarter of fiscal 2013. For additional information, please refer to Note 6 to the consolidated financial statements contained in Part I, Item 1 of this Quarterly Report.

Restructuring and Divestiture Charges. In the fourth quarter of fiscal 2012, in connection with our acquisition of Gen-Probe, we implemented a restructuring action to consolidate our Diagnostics operations by decreasing headcount and closing our legacy molecular diagnostics operations in Madison, Wisconsin. We also finalized our decision to transfer production of our interventional breast products from our Indianapolis facility to our Costa Rica facility. In fiscal 2013 and in the first quarter of fiscal 2014, we implemented cost containment measures that primarily resulted in headcount reductions. In the second quarter of fiscal 2014, we terminated employees at our Warstein, Germany location, and as part of ongoing management changes, we terminated certain executives. Pursuant to U.S. generally accepted accounting principles, the related severance and benefit charges are being recognized either ratably over the respective required employee service periods or up-front for contractual benefits, and other charges are being recognized as incurred. In the current three and six month periods, we recorded aggregate charges of $11.6 million and $29.9 million, respectively, from these actions. The charges recorded in fiscal 2014 primarily related to severance and benefits, and the six month period includes a $3.1 million impairment charge to record certain buildings at our Warstein, Germany location to their estimated fair value. In the three and six month periods in the prior year, we recorded restructuring charges of $12.5 million and $16.4 million, respectively, primarily for severance and benefits. For additional information pertaining to restructuring actions and charges, please refer to Note 3 to the consolidated financial statements contained in Part I, Item 1 of this Quarterly Report.

Interest Income

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |  |  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |
|  | Amount |  |  | Amount |  |  | Amount |  |  | % |  |  | Amount |  |  | Amount |  |  | Amount |  |  | % |
Interest Income |  | $ | 149 |  |  | $ | 207 |  |  | $ | (58) |  |  |  | (28)% |  |  | $ | 505 |  |  | $ | 467 |  |  | $ | 38 |  |  |  | 8% |

Interest income decreased in the current quarter compared to the corresponding period in the prior year due to lower invested average cash balances and increased in the current six month period compared to the corresponding period in the prior year primarily due to slightly higher average cash balances in the current year period.

Interest Expense

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |  |  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |
|  | Amount |  |  | Amount |  |  | Amount |  |  | % |  |  | Amount |  |  | Amount |  |  | Amount |  |  | % |
Interest Expense |  | $ | (54,449) |  |  | $ | (76,049) |  |  | $ | 21,600 |  |  |  | (28)% |  |  | $ | (115,739) |  |  | $ | (148,130) |  |  | $ | 32,391 |  |  |  | (22)% |

Interest expense consists primarily of the cash interest costs and the related amortization of the debt discount and deferred financing costs on our Convertible Notes, Senior Notes and amounts borrowed under our Credit Agreement. The decrease in interest expense in the current three and six month periods compared to the corresponding periods in the prior year was primarily due to principal payments in fiscal 2013 and 2014, which included $325.0 million of voluntary pre-payments, of amounts borrowed under our Credit Agreement, lower weighted-average interest rates due to refinancing both the Term Loan A and Term Loan B facilities, and the redemption of $405.0 million principal of our 2007 Notes in December 2013. These decreases were partially offset by additional interest expense from the accretion of principal on the 2013 Notes at 4.0% annually.

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Debt Extinguishment Loss

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |  |  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |
|  | Amount |  |  | Amount |  |  | Amount |  |  | % |  |  | Amount |  |  | Amount |  |  | Amount |  |  | % |
Debt Extinguishment Loss |  | $ | (4,437) |  |  | $ | (3,247) |  |  | $ | (1,190) |  |  |  | 37% |  |  | $ | (7,377) |  |  | $ | (3,247) |  |  | $ | (4,130) |  |  |  | 127% |

In the second quarter of fiscal 2014, we refinanced our Term Loan B facility and voluntarily prepaid $25.0 million of principal. In connection with this transaction, we recorded a debt extinguishment loss of $4.4 million for the write off of the pro-rata share of the debt discount and deferred issuance costs. In the first quarter of fiscal 2014, we made a $100.0 million voluntary pre-payment on our Term Loan B facility. As a result, the pro-rata share of the debt discount and deferred issuance costs aggregating $2.9 million related to this prepayment was recorded as a debt extinguishment loss. In the second quarter of fiscal 2013, we refinanced our Term Loan A facility and recorded a debt extinguishment loss of $3.2 million for the write off of the pro-rata share of the debt discount and deferred issuance costs.

Other (Expense) Income, net

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |  |  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |
|  | Amount |  |  | Amount |  |  | Amount |  |  | % |  |  | Amount |  |  | Amount |  |  | Amount |  |  | % |
Other (Expense) Income, net |  | $ | (3,263) |  |  | $ | (201) |  |  | $ | (3,062) |  |  |  | 1,523% |  |  | $ | (2,093) |  |  | $ | 1,038 |  |  | $ | (3,131) |  |  |  | (302)% |

In the second quarter of fiscal 2014, this account was primarily comprised of an other-than-temporary impairment charge on a cost-method equity investment of $3.0 million and net foreign currency exchange losses of $0.5 million. In the second quarter of fiscal 2013, this account was primarily comprised of an other-than temporary impairment charge for a cost-method investment of $1.7 million and net foreign currency exchange losses of $0.7 million, partially offset by $2.2 million of gains on the cash surrender value of life insurance contracts and mutual funds related to our deferred compensation plan.

For the current six month period, this account was primarily comprised of other-than-temporary impairment charges on cost-method equity investments of $3.7 million and net foreign currency exchange losses of $1.0 million, partially offset by gains of $2.7 million on the cash surrender value of life insurance contracts and mutual funds related to our deferred compensation plan. For the prior year six month period, this account was primarily comprised of investment gains related to our deferred compensation plan of $2.4 million, partially offset by the other-than temporary impairment charge of $1.7 million.

Provision (Benefit) for Income Taxes

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |  |  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |
|  | Amount |  |  | Amount |  |  | Amount |  |  | % |  |  | Amount |  |  | Amount |  |  | Amount |  |  | % |
Provision (Benefit) for Income Taxes |  | $ | 5,015 |  |  | $ | (22,644) |  |  | $ | 27,659 |  |  |  | 122% |  |  | $ | 8,947 |  |  | $ | (33,115) |  |  | $ | 42,062 |  |  |  | 127% |

Our effective tax rate for the current three and six month periods was a provision of 42.7% and 67.9%, respectively, on pre-tax losses, compared to a benefit of 30.7% and 40.8%, respectively, on pre-tax losses for the corresponding periods in the prior year. For the three and six months ended March 29, 2014, the effective tax rate differed from the statutory rate primarily due to unbenefited foreign losses. For the three months ended March 30, 2013, the tax rate benefit was less than the statutory rate primarily due to non-deductible contingent consideration expense related to TCT and Interlace, partially offset by the effect of the retroactively reinstated Federal research tax credit in the second quarter of fiscal 2013 and the domestic production activities deduction benefit. For the six months ended March 30, 2013, the tax rate benefit was higher than the statutory rate primarily due to a $19.0 million valuation allowance release related to capital losses which were utilized to offset capital gains generated during the year and the effect of the retroactively reinstated Federal research tax credit in the second quarter of fiscal 2013, partially offset by non-deductible contingent consideration expenses related to TCT and Interlace.

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Segment Results of Operations

We report our business as four segments: Diagnostics, Breast Health, GYN Surgical and Skeletal Health. The accounting policies of the segments are the same as those described in the Notes to the Consolidated Financial Statements included in our 2013 Annual Report on Form 10-K. We measure segment performance based on total revenues and operating income or loss. Revenues from product sales of each of these segments are described in further detail above. The discussion that follows is a summary analysis of total revenues and the primary changes in operating income or loss by segment.

Diagnostics

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |  |  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |
|  | Amount |  |  | Amount |  |  | Amount |  |  | % |  |  | Amount |  |  | Amount |  |  | Amount |  |  | % |
Total Revenues |  | $ | 290,802 |  |  | $ | 296,507 |  |  | $ | (5,705) |  |  |  | (2)% |  |  | $ | 576,568 |  |  | $ | 602,423 |  |  | $ | (25,855) |  |  |  | (4)% |
Operating Income (Loss) |  | $ | 15,243 |  |  | $ | (46,978) |  |  | $ | 62,221 |  |  |  | 132% |  |  | $ | 19,997 |  |  | $ | (32,683) |  |  | $ | 52,680 |  |  |  | 161% |
Operating Income (Loss) as a % of Segment Revenue |  |  | 5% |  |  |  | (16)% |  |  |  |  |  |  |  |  |  |  |  | 3% |  |  |  | (5)% |  |  |  |  |  |  |  |  |

Diagnostics revenues decreased in the current three and six month periods compared to the corresponding periods in the prior year primarily due to the decrease in product revenues discussed above.

Operating income for this business segment increased in the current three and six month periods compared to the corresponding periods in the prior year. Gross margin in absolute dollars increased in both of the current year periods primarily due to the inclusion in the prior year corresponding three and six month periods of fair value adjustments of $22.5 million and $52.4 million, respectively, for acquired Gen-Probe inventory that did not recur in the current year periods. In addition, we were able to record contingent revenue under our blood screening collaboration in the current year periods that had previously been recorded as unbilled accounts receivable in purchase accounting as described above. In addition, we experienced favorable manufacturing variances across our products and lower royalty costs for ThinPrep, partially offset by lower ThinPrep volumes, unfavorable pricing on ThinPrep and Aptima sales, and increased intangible asset amortization expense. The gross margin rate improved to 46.1% and 46.3% in the current three and six month periods, respectively, from 39.9% and 38.9% in the corresponding periods in the prior year.

Operating expenses decreased in the current three and six month periods compared to the corresponding periods in the prior year. These decreases were primarily due to the inclusion in the prior year corresponding periods of $29.4 million and $58.9 million, respectively, of contingent consideration charges related to TCT and $4.1 million and $9.4 million, respectively, of operating expenses related to the Lifecodes product line (which was divested in the second quarter of fiscal 2013). In addition, we incurred lower compensation and benefits expense from headcount reductions as part of our cost containment measures, lower travel, meeting and trade show expenses, and lower restructuring and integration costs, partially offset by higher bonus expense. In the current six month period we incurred higher medical device excise taxes of $2.3 million, and the prior year six month period included a $53.9 million gain related to the settlement with KV for the sale of our rights to Makena as discussed above.

Breast Health

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |  |  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |
|  | Amount |  |  | Amount |  |  | Amount |  |  | % |  |  | Amount |  |  | Amount |  |  | Amount |  |  | % |
Total Revenues |  | $ | 238,705 |  |  | $ | 220,058 |  |  | $ | 18,647 |  |  |  | 8% |  |  | $ | 465,196 |  |  | $ | 440,866 |  |  | $ | 24,330 |  |  |  | 6% |
Operating Income |  | $ | 25,818 |  |  | $ | 47,892 |  |  | $ | (22,074) |  |  |  | (46)% |  |  | $ | 69,667 |  |  | $ | 92,837 |  |  | $ | (23,170) |  |  |  | (25)% |
Operating Income as a % of Segment Revenue |  |  | 11% |  |  |  | 22% |  |  |  |  |  |  |  |  |  |  |  | 15% |  |  |  | 21% |  |  |  |  |  |  |  |  |

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Breast Health revenues increased in the current three and six month periods compared to the corresponding periods in the prior year primarily due to the $11.2 million and $10.9 million increase in product revenues, respectively, discussed above, and the $7.4 million and $13.4 million increase in service revenues, respectively, that was substantially related to additional service contracts for the increased number of digital mammography systems in our installed base.

Operating income for this business segment decreased in the current three and six month periods compared to the corresponding periods in the prior year primarily due to a reduction in gross margin in absolute dollars and higher operating expenses. Gross margin in absolute dollars decreased primarily due to the $26.6 million developed technology asset impairment discussed above, partially offset by the increase in 3D Dimensions sales on both a unit basis and as a percentage of total digital mammography systems sales and higher service revenues without a corresponding increase in related service costs. Our 3D Dimensions systems have higher average sales prices than our 2D systems resulting in higher gross margins. As a result of the impairment charge, the overall gross margin rate declined to 41.1% and 46.1% in the current three and six month periods, respectively, compared to 50.3% and 49.2% in the corresponding periods in the prior year.

Operating expenses increased in the current three and six month periods compared to the corresponding periods in the prior year primarily due to higher restructuring charges, which includes corporate allocated amounts, higher research and development expenditures primarily for next generation breast biopsy devices, higher corporate general and administrative allocations, intangible asset and property impairment charges aggregating $1.8 million, and higher bonus expense, partially offset by lower sales and marketing expenditures including lower spend on tomosynthesis awareness campaigns compared to the prior year periods, and lower legal fees. In addition, the current six month period had an increase in the medical device excise tax of $1.6 million.

GYN Surgical

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |  |  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |
|  | Amount |  |  | Amount |  |  | Amount |  |  | % |  |  | Amount |  |  | Amount |  |  | Amount |  |  | % |
Total Revenues |  | $ | 72,043 |  |  | $ | 73,692 |  |  | $ | (1,649) |  |  |  | (2)% |  |  | $ | 150,897 |  |  | $ | 154,601 |  |  | $ | (3,704) |  |  |  | (2)% |
Operating Income |  | $ | 6,579 |  |  | $ | 2,241 |  |  | $ | 4,338 |  |  |  | 194% |  |  | $ | 17,702 |  |  | $ | 2,863 |  |  | $ | 14,839 |  |  |  | 518% |
Operating Income as a % of Segment Revenue |  |  | 9% |  |  |  | 3% |  |  |  |  |  |  |  |  |  |  |  | 12% |  |  |  | 2% |  |  |  |  |  |  |  |  |

GYN Surgical revenues decreased in the current three and six month periods compared to the corresponding periods in the prior year due to the decrease in product revenues discussed above.

Operating income for this business segment increased in the current three and six month periods compared to the corresponding periods in the prior year primarily due to lower operating expenses partially offset by lower gross margin in absolute dollars from lower revenues. The gross margin rate was relatively flat at 55.6% and 57.6% in the current three and six month periods, respectively, compared to 55.2% and 57.6% in the corresponding periods in the prior year.

Operating expenses declined in the current three and six month periods compared to the corresponding periods in the prior year primarily due to headcount reductions, lower research and development program expenditures and lower marketing related expenditures all as a result of our cost containment measures, and lower intangible asset amortization expense. Expenses were also lower in the current six month period due to the inclusion in the first quarter of fiscal 2013 of $10.0 million of contingent consideration charges related to the Interlace earn-out.

Skeletal Health

|  | Three Months Ended |  |  | Six Months Ended |
|  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |  |  | March 29, 2014 |  |  | March 30, 2013 |  |  | Change |
|  | Amount |  |  | Amount |  |  | Amount |  |  | % |  |  | Amount |  |  | Amount |  |  | Amount |  |  | % |
Total Revenues |  | $ | 23,458 |  |  | $ | 22,406 |  |  | $ | 1,052 |  |  |  | 5% |  |  | $ | 44,795 |  |  | $ | 46,135 |  |  | $ | (1,340) |  |  |  | (3)% |
Operating Income |  | $ | 2,610 |  |  | $ | 2,387 |  |  | $ | 223 |  |  |  | 9% |  |  | $ | 4,169 |  |  | $ | 5,754 |  |  | $ | (1,585) |  |  |  | (28)% |
Operating Income as a % of Segment Revenue |  |  | 11% |  |  |  | 11% |  |  |  |  |  |  |  |  |  |  |  | 9% |  |  |  | 12% |  |  |  |  |  |  |  |  |

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Skeletal Health revenues increased in the current three month period and decreased in the current six month period compared to the corresponding periods in the prior year primarily due to the changes in product revenues discussed above.

Operating income increased in the current quarter compared to the corresponding period in the prior year primarily due to the increase in gross margin in absolute dollars as a result of higher sales, while operating expenses remained relatively flat. Operating income in the current six month period decreased primarily due to a decrease in gross margin in absolute dollars as a result of lower revenues and operating expenses increased slightly, primarily due to restructuring expenses. The gross margin rate declined to 43.0% and 43.3% in the current three and six months, respectively, from 43.4% and 44.2% in the corresponding periods in the prior year primarily due to lower sales volumes.

LIQUIDITY AND CAPITAL RESOURCES

At March 29, 2014, we had $713.9 million of working capital, and our cash and cash equivalents totaled $484.5 million. Our cash and cash equivalents balance decreased by $338.0 million during the first six months of fiscal 2014 primarily due to debt principal payments and capital expenditures, partially offset by operating cash flows and proceeds from the exercise of stock options granted pursuant to our employee benefit programs.

In the first six months of fiscal 2014, our operating activities provided us with $218.3 million of cash, which included a net loss of $22.1 million, offset primarily by non-cash charges for depreciation and amortization aggregating $257.9 million, non-cash interest expense of $35.8 million related to our outstanding debt, asset impairment charges of $33.3 million, stock-based compensation expense of $26.1 million and debt extinguishment losses of $7.4 million. These adjustments to net loss were partially offset by a decrease in net deferred tax liabilities of $164.8 million, primarily from the amortization of intangible assets. Cash provided by operations included a net cash inflow of $42.5 million from changes in our operating assets and liabilities. Changes in our operating assets and liabilities were driven primarily by a decrease in prepaid income taxes of $44.7 million due to the utilization thereof to fund our tax liability, a decrease in accounts receivable of $21.5 million due to improved collections, a decrease in prepaid expenses of $9.8 million and an increase in deferred revenue of $9.1 million as we increase our installed base of digital mammography systems. These inflows were partially offset by an increase in inventory of $23.8 million for expected demand primarily in our Diagnostics business for instruments and assays, a decrease in accounts payable of $12.3 million based on the timing of payments and a decrease in accrued expenses of $6.5 million primarily due to the payment of contingent consideration of $31.1 million and interest on our debt partially offset by a net increase in bonus and benefits accruals and restructuring.

In the first six months of fiscal 2014, our investing activities utilized $34.6 million of cash primarily for capital expenditures of $37.7 million, which consisted primarily of the placement of equipment under customer usage agreements and purchases of manufacturing equipment and computer hardware.

In the first six months of fiscal 2014, our financing activities used cash of $521.2 million primarily due to $562.5 million in debt principal payments comprised of $405.0 million to pay off our 2007 Notes and $157.5 million under our Credit Agreement, and $9.2 million for employee-related taxes withheld for the net share settlement of vested restricted stock units. Partially offsetting these uses of cash were proceeds of $53.7 million from our equity plans, primarily from the exercise of stock options.

Debt

We had total recorded debt outstanding of $4.27 billion at March 29, 2014, which is comprised of amounts outstanding under our Credit Agreement of $2.06 billion (principal $2.08 billion), Senior Notes of $1.0 billion and Convertible Notes of $1.21 billion (principal $1.32 billion).

Credit Agreement

Concurrent with closing the Gen-Probe acquisition on August 1, 2012, we and certain of our domestic subsidiaries, or the Guarantors, entered into a credit and guaranty agreement, or the Credit Agreement, with Goldman Sachs Bank USA, in its capacity as administrative and collateral agent, and the lenders party thereto. The Credit Agreement was amended in the second quarter of fiscal 2013, resulting in a 100 basis point reduction to the interest rate on the Term Loan A facility and the Revolving Facility. On August 2, 2013, the Credit Agreement was further amended resulting in a 75 basis point reduction to the interest rate on the Term Loan B facility. On February 26, 2014, the Credit Agreement was amended for the third time resulting in a further 50 basis point reduction in the interest rate on the Term Loan B facility.

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##### Table of Contents

The facilities under the Credit Agreement initially consisted of:

| • |  | $1.0 billion senior secured tranche A term loan, or Term Loan A, with a final maturity date of August 1, 2017;

| • |  | $1.5 billion secured tranche B term loan, or Term Loan B, with a final maturity date of August 1, 2019; and

| • |  | $300.0 million secured revolving credit facility, or Revolving Facility, with a final maturity date of August 1, 2017.

The credit facilities are secured by first-priority liens on, and a first-priority security interest in, substantially all of our assets and the assets of the Guarantors, including all of the capital stock of substantially all of the U.S. subsidiaries owned by us and the Guarantors, 65% of the capital stock of certain of our first-tier foreign subsidiaries and all intercompany debt.

We are required to make scheduled principal payments under the Term Loan A facility in increasing amounts ranging from $12.5 million per three month period beginning October 31, 2012 to $50.0 million per three month period commencing October 31, 2015, and under the Term Loan B facility in equal installments of $3.75 million per three month period beginning on October 31, 2012 and for 27 three month periods thereafter. The remaining balance of $400 million for Term Loan A and $1.07 billion for Term Loan B is due at maturity. Any amounts outstanding under the Revolving Facility are due at maturity. We are required to make principal repayments first, pro rata among the term loan facilities, and second to the Revolving Facility from specified excess cash flows from operations and from the net proceeds of specified types of asset sales, debt issuances, insurance recoveries and equity offerings. Subject to certain limitations, we may voluntarily pre-pay any of the credit facilities without premium or penalty.

The Credit Agreement contains affirmative and negative covenants customarily applicable to senior secured credit facilities, including covenants restricting our ability and the ability of the Guarantors, subject to negotiated exceptions, to incur additional indebtedness and additional liens on their assets, engage in mergers or acquisitions or dispose of assets, enter into sale-leaseback transactions, pay dividends, repurchase or redeem capital stock or make other distributions, voluntarily prepay other indebtedness, enter into transactions with affiliated persons, make investments, and change the nature of their businesses.

The credit facilities contain two financial ratio covenants measured as of the last day of each fiscal quarter: a total net leverage ratio and an interest coverage ratio. The total net leverage ratio is 6.00:1.00 beginning on our fiscal quarter ended March 29, 2014, which then decreases over time to 4.00:1.00 for the fiscal quarter ending September 30, 2017 and each fiscal quarter thereafter. The interest coverage ratio is 3.25:1.00 beginning on our fiscal quarter ending March 29, 2014, which then increases over time to 3.75:1.00 for the fiscal quarter ending September 30, 2017 and each fiscal quarter thereafter. The total net leverage ratio is defined as the ratio of our consolidated net debt as of the quarter end to our consolidated adjusted EBITDA for the four-fiscal quarter period ending on the measurement date. The interest coverage ratio is defined as the ratio of our consolidated adjusted EBITDA for the prior four-fiscal quarter period ending on the measurement date to adjusted consolidated cash interest expense for the same measurement period. These terms, and the calculation thereof, are defined in further detail in the Credit Agreement. As of March 29, 2014, we were in compliance with these covenants.

Senior Notes

On August 1, 2012, we completed a private placement of $1.0 billion aggregate principal amount of our Senior Notes at an offering price of 100% of the aggregate principal amount of the Senior Notes. The Senior Notes are our general senior unsecured obligations and are guaranteed on a senior unsecured basis by the Guarantors. The Senior Notes mature on August 1, 2020 and bear interest at the rate of 6.25% per year, payable semi-annually on February 1 and August 1 of each year, commencing on February 1, 2013.

We may redeem up to 35% of the aggregate principal amount of the Senior Notes with the net cash proceeds of certain equity offerings at any time and from time to time before August 1, 2015, at a redemption price equal to 106.250% of the aggregate principal amount so redeemed, plus accrued and unpaid interest, if any, to the redemption date. We also have the option to redeem the Senior Notes on or after: August 1, 2015 through July 31, 2016 at 103.125% of par; August 1, 2016 through July 31, 2017 at 102.083% of par; August 1, 2017 through July 31, 2018 at 101.042% of par; and August 1, 2018 and thereafter at 100% of par. In addition, if we undergo a change of control, as provided in the indenture, we will be required to make an offer to purchase each holder’s Senior Notes at a price equal to 101% of the aggregate principal amount of the Senior Notes, plus accrued and unpaid interest, if any, to the repurchase date.

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Convertible Notes

At March 29, 2014, our Convertible Notes, in the aggregate principal amount of $1.32 billion, are recorded at $1.21 billion, which is net of the unamortized debt discount attributed to the embedded conversion feature of the Convertible Notes. These notes consist of:

| • |  | $450 million of our 2.00% Convertible Exchange Senior Notes due 2037 issued in November 2010 (2010 Notes);

| • |  | $500 million of our 2.00% Convertible Senior Notes due 2042 issued in March 2012 (2012 Notes); and

| • |  | $370 million of our 2.00% Convertible Senior Notes due 2043 issued in February 2013 (2013 Notes).

Holders may require us to repurchase the 2010 Notes on each of December 15, 2016, 2020, 2025, on December 13, 2030 and on December 14, 2035 or upon a fundamental change, as provided in the indenture for the 2010 Notes, at a repurchase price equal to 100% of their accreted principal amount, plus accrued and unpaid interest.

Holders may require us to repurchase the 2012 Notes on each of March 1, 2018, 2022, 2027 and 2032, and on March 2, 2037 or upon a fundamental change, as provided in the indenture for the 2012 Notes, at a repurchase price equal to 100% of their accreted principal amount, plus accrued and unpaid interest.

Holders may require us to repurchase the 2013 Notes on each of December 15, 2017, 2022, 2027, 2032 and 2037 or upon a fundamental change, as provided in the indenture for the 2013 Notes, at a repurchase price equal to 100% of their accreted principal amount, plus accrued and unpaid interest.

We may redeem any of the 2010 Notes, 2012 Notes and 2013 Notes beginning December 19, 2016, March 6, 2018 and December 15, 2017, respectively. We may redeem all or a portion of the 2010 Notes, 2012 Notes, and 2013 Notes (i.e., in cash or a combination of cash and shares of our common stock) at a redemption price equal to 100% of their principal amount, plus accrued and unpaid interest to, but excluding, the applicable redemption date.

Stock Repurchase Program

On November 11, 2013, we announced that our Board of Directors authorized the repurchase of up to $250.0 million of our outstanding common stock over the next three years. Under the stock repurchase program, we are authorized to repurchase, from time-to-time, shares of our outstanding common stock on the open market or in privately negotiated transactions in the United States. The timing and amount of stock repurchases will be determined based upon our evaluation of market conditions and other factors. The stock repurchase program may be suspended, modified or discontinued at any time, and we have no obligation to repurchase any amount of our common stock under the program. Through March 29, 2014, we had not repurchased any shares of our common stock under this program.

Legal Contingencies

We are currently involved in several legal proceedings and claims. In connection with these legal proceedings and claims, management periodically reviews estimates of potential costs to be incurred by us in connection with the adjudication or settlement, if any, of these proceedings. These estimates are developed in consultation with outside counsel and are based on an analysis of potential litigation outcomes and settlement strategies. In accordance with ASC 450, Contingencies, loss contingencies are accrued if, in the opinion of management, an adverse outcome is probable and such financial outcome can be reasonably estimated. It is possible that future results for any particular quarter or annual period may be materially affected by changes in our assumptions or the effectiveness of our strategies relating to these proceedings.

Future Liquidity Considerations

We believe that our cash and cash equivalents, cash flows from operations and the cash available under our Revolving Facility will provide us with sufficient funds in order to fund our expected normal operations and debt payments, including interest, over the next twelve months. Our longer-term liquidity is contingent upon future operating performance. We may also require additional capital in the future to fund capital expenditures, repayment of debt and related deferred tax liabilities, as applicable, acquisitions, strategic transactions or other investments. As described above, we have significant indebtedness outstanding under our Credit Agreement, Senior Notes and Convertible Notes. These capital requirements could be substantial. For a description of risks to our operating performance and our indebtedness, see “Risk Factors” in Part I, Item 1A in our Annual Report on Form 10-K for the fiscal year ended September 28, 2013.

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CRITICAL ACCOUNTING POLICIES AND ESTIMATES

The discussion and analysis of our financial condition and results of operations are based upon our interim consolidated financial statements, which have been prepared in accordance with U.S. generally accepted accounting principles. The preparation of these consolidated financial statements requires us to make estimates and judgments that affect the reported amounts of assets, liabilities, revenues and expenses, and related disclosure of contingent assets and liabilities. On an on-going basis, we evaluate our estimates, including those related to revenue recognition for multiple element arrangements, allowance for doubtful accounts, reserves for excess and obsolete inventories, valuations, purchase price allocations and contingent consideration related to business combinations, expected future cash flows including growth rates, discount rates, terminal values and other assumptions used to evaluate the recoverability of long-lived assets and goodwill, estimated fair values of intangible assets and goodwill, amortization methods and periods, warranty reserves, certain accrued expenses, restructuring and other related charges, stock-based compensation, contingent liabilities, tax reserves and recoverability of our net deferred tax assets and related valuation allowances. We base our estimates on historical experience and various other assumptions that are believed to be reasonable under the circumstances. Actual results could differ from these estimates if past experience or other assumptions do not turn out to be substantially accurate. Any differences may have a material impact on our financial condition and results of operations. For a discussion of how these and other factors may affect our business, see the “Cautionary Statement” above and “Risk Factors” in our Annual Report on Form 10-K for the fiscal year ended September 28, 2013.

The critical accounting estimates that we believe affect our more significant judgments and estimates used in the preparation of our consolidated financial statements presented in this report are described in Management’s Discussion and Analysis of Financial Condition and Results of Operations and in the Notes to the Consolidated Financial Statements included in our Annual Report on Form 10-K for the fiscal year ended September 28, 2013. There have been no material changes to our critical accounting policies or estimates from those set forth in our Annual Report on Form 10-K for the fiscal year ended September 28, 2013.

Item 3. | Quantitative and Qualitative Disclosures About Market Risk.

Financial Instruments, Other Financial Instruments, and Derivative Commodity Instruments. Financial instruments consist of cash equivalents, accounts receivable, a publicly traded equity security, cost-method equity investments, mutual funds, insurance contracts and related deferred compensation plan liabilities, accounts payable and debt obligations. Except for our outstanding Convertible Notes and Senior Notes, the fair value of these financial instruments approximates their carrying amount. As of March 29, 2014, we have $1.32 billion in principal amount of Convertible Notes outstanding, which are comprised of our 2010 Notes with a principal amount of $450.0 million, our 2012 Notes with a principal amount of $500.0 million and our 2013 Notes with a principal amount of $370.0 million. The Convertible Notes are recorded net of the unamortized debt discount on our consolidated balance sheets. The fair value of our 2010 Notes, 2012 Notes and 2013 Notes as of March 29, 2014 was approximately $507.8 million, $502.8 million and $390.9 million, respectively. Amounts outstanding under our Credit Agreement aggregating $2.08 billion aggregate principal as of March 29, 2014 are subject to variable rates of interest based on current market rates, and as such, we believe the carrying amount of these obligations approximates fair value. The fair value of our Senior Notes is approximately $1.06 billion.

Primary Market Risk Exposures. Our primary market risk exposure is in the areas of interest rate risk and foreign currency exchange rate risk. We incur interest expense on borrowings outstanding under our Convertible Notes, Senior Notes and Credit Agreement. The Convertible Notes and Senior Notes have fixed interest rates. Borrowings under our Credit Agreement bear interest at a rate per annum, at our option, initially, with respect to all loans made under Term Loan A (i) at the Base Rate plus 1.00% per annum, or (ii) at the Adjusted Eurodollar Rate (i.e., the Libor rate) plus 2.00%, and with respect to loans made under Term Loan B: (i) at the Base Rate, with a floor of 1.75%, plus 1.50%, or (ii) at the Adjusted Eurodollar Rate (i.e., the Libor rate), with a floor of 0.75% plus 2.50%.

As of March 29, 2014, there was $2.08 billion of aggregate principal amount outstanding under the Credit Agreement comprised of $925.0 million under the Term Loan A facility and $1.15 billion under the Term Loan B facility. Since these debt obligations are variable rate instruments, our interest expense associated with these instruments is subject to change. A 10% adverse movement (increase in Libor rate) would increase annual interest expense by less than $1.0 million due to the low current interest rate environment and the floor on our Term Loan B facility.

The return from cash and cash equivalents will vary as short-term interest rates change. A hypothetical 10% increase or decrease in interest rates, however, would not have a material adverse effect on our financial condition.

Foreign Currency Exchange Risk. Our international business is subject to risks, including, but not limited to: unique economic conditions, changes in political climate, differing tax structures, other regulations and restrictions, and foreign exchange rate volatility. Accordingly, our future results could be materially adversely impacted by changes in these or other factors.

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We conduct business worldwide and maintain sales and service offices outside the United States as well as manufacturing facilities in Costa Rica, Germany, England, Canada and China. The expenses of our international offices are denominated in local currencies, except at our Costa Rica subsidiary, where the majority of the business is conducted in U.S. dollars. Our international sales are denominated in a number of currencies, primarily the Euro, U.S. dollar and Renminbi. Fluctuations in foreign currency rates could affect our sales, cost of goods and operating margins and could result in exchange losses. In addition, currency devaluations can result in a loss if we hold deposits of that currency.

We believe that the operating expenses of our international subsidiaries that are incurred in local currencies will not have a material adverse effect on our business, results of operations or financial condition. Our operating results and certain assets and liabilities that are denominated in the Euro are affected by changes in the relative strength of the U.S. dollar against the Euro. Our expenses, denominated in Euros, are positively affected when the U.S. dollar strengthens against the Euro and adversely affected when the U.S. dollar weakens. However, we believe that the foreign currency exchange risk is not significant. A hypothetical 10% increase or decrease in foreign currencies that we transact in would not have a material adverse impact on our financial condition or results of operations.

Item 4. | Controls and Procedures.

We maintain disclosure controls and procedures that are designed to ensure that information required to be disclosed in our Securities Exchange Act reports is recorded, processed, summarized and reported within the time periods specified in the SEC’s rules and forms, and that such information is accumulated and communicated to our management, including our Chief Executive Officer and Chief Financial Officer, as appropriate, to allow timely decisions regarding required disclosure. In designing and evaluating the disclosure controls and procedures, management recognized that any controls and procedures, no matter how well designed and operated, can provide only reasonable assurance of achieving the desired control objectives, as ours are designed to do, and management necessarily was required to apply its judgment in evaluating the cost-benefit relationship of possible controls and procedures.

As of March 29, 2014, we carried out an evaluation, under the supervision and with the participation of our management, including our Chief Executive Officer and Chief Financial Officer, of the effectiveness of the design and operation of our disclosure controls and procedures, as defined in Rules 13a-15(e) and 15d-15(e) under the Securities Exchange Act of 1934. Based upon that evaluation, our Chief Executive Officer and Chief Financial Officer concluded that our disclosure controls and procedures are effective as of March 29, 2014.

An evaluation was also performed under the supervision and with the participation of our management, including our Chief Executive Officer and Chief Financial Officer, of any change in our internal control over financial reporting that occurred during our last fiscal quarter that has materially affected, or is reasonably likely to materially affect, our internal control over financial reporting. That evaluation did not identify any change in our internal control over financial reporting that occurred during our latest fiscal quarter that has materially affected, or is reasonably likely to materially affect, our internal control over financial reporting.

PART II – OTHER INFORMATION

Item 1. | Legal Proceedings.

Information with respect to this Item may be found in Note 5 to the Consolidated Financial Statements in this Quarterly Report on Form 10-Q, which information is incorporated herein by reference.

Additional information on our commitments and contingencies can be found in our Annual Report on Form 10-K for our fiscal year ended September 28, 2013.

Item 1A. | Risk Factors.

There are no material changes from the risk factors as previously disclosed in our Annual Report on Form 10-K for our fiscal year ended September 28, 2013.

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Item 2. | Unregistered Sales of Equity Securities and Use of Proceeds.

Issuer’s Purchases of Equity Securities

Period of Repurchase |  | Total Number of Shares Purchased (#) (1) |  |  | Average Price Paid Per Share ($) (1) |  |  | Total Number of Shares Purchased As Part of Publicly Announced Plans or Programs (#) (2) |  |  | Maximum Number of Shares That May Yet Be Purchased Under Our Programs ($ in thousands) |
December 29, 2013 – January 25, 2014 |  |  | 8,597 |  |  | $ | 22.01 |  |  |  | — |  |  | $ | — |
January 26, 2014 – February 22, 2014 |  |  | — |  |  |  | — |  |  |  | — |  |  |  | — |
February 23, 2014 – March 29, 2014 |  |  | 48 |  |  |  | 21.81 |  |  |  | — |  |  |  | — |
Total |  |  | 8,645 |  |  | $ | 22.01 |  |  |  | — |  |  | $ | — |

(1) | For the majority of restricted stock units granted, the number of shares issued on the date that the restricted stock units vest is net of the minimum statutory tax withholding requirements that we pay in cash to the appropriate taxing authorities on behalf of our employees. These repurchases of our common stock were to cover employee income tax withholding obligations in connection with the vesting of restricted stock units under our equity incentive plans.

(2) | On November 11, 2013, we announced that our Board of Directors authorized the repurchase of up to $250.0 million of our outstanding common stock over the next three years. Through March 29, 2014, we had not repurchased any shares of our common stock under this program.

Item 5. | Other Information

On May 1, 2014, the Company entered into a Transition and Severance Agreement (the “Transition Agreement”) and a Settlement and Release Agreement (the “Settlement Agreement” and, together with the Transition Agreement, the “Agreements”), with David P. Harding, the Company’s Senior Vice President, Corporate Strategy. A summary of the material terms and conditions of the Agreements is set forth below. The below description of the Agreements does not purport to be complete and it is qualified in its entirety by reference to the Transition Agreement and the Settlement Agreement, a copy of each of which is attached to this Quarterly Report as Exhibits 10.5 and 10.6, respectively, and is incorporated herein in its entirety by reference.

Under the terms of the Agreements and until his employment is terminated, (i) Mr. Harding will continue to receive his base salary of $425,000 per year; (ii) Mr. Harding’s outstanding equity awards will remain outstanding and continue to vest subject to and in accordance with their respective terms; (iii) Mr. Harding will be entitled to continue to participate in any and all retirement, medical, dental, life insurance and other employee benefit plans in which he participated as of the date of the Transition Agreement; and (iv) Mr. Harding will be entitled to receive a one-time payment during the payroll period following June 15, 2014 of an amount equal to Mr. Harding’s fiscal 2014 target payout under the Company’s Short-Term Incentive Plan, which will be pro-rated for the period of his tenure in fiscal 2014 prior to June 15, 2014 (it being understood that Mr. Harding shall not be entitled to any further fiscal 2014 bonus or other bonus thereafter).

Following the termination of his employment and subject to Mr. Harding executing a further general release of all claims as provided under the Settlement Agreement, Mr. Harding will be entitled to receive the following severance benefits:

| • |  | If the Company terminates the employment of Mr. Harding without cause or Mr. Harding resigns for any reason, Mr. Harding shall be entitled to a lump sum cash payment equal to his accrued compensation through the date of termination of his employment. If such termination without cause or resignation for any reason is prior to September 15, 2015, Mr. Harding will also receive a continuation of his base salary until that date.

| • |  | If the Company terminates the employment of Mr. Harding by reason of Mr. Harding’s death, disability (as defined) or for cause (as defined), Mr. Harding shall be entitled to a lump sum cash payment equal to his accrued compensation through the date of termination of his employment.

The Agreements supersede and replace in their entirety Mr. Harding’s prior severance agreement, which provided for a fifteen month severance benefit, and change of control agreement. The Agreements also provide that Mr. Harding’s non-competition agreement, which contains restrictive covenants pertaining to non-competition, confidentiality and non-solicitation, will remain in effect.

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Item 6. | Exhibits.

(a) Exhibits

|  |  |  | Incorporated by Reference
Exhibit Number |  | Exhibit Description |  | Form |  | Filing Date/ Period End Date
3.2 |  | Fourth Amended and Restated By-laws of Hologic, Inc., as amended. |  | 10-Q |  | 12/28/2013
10.1 |  | Refinancing Amendment No. 3 dated February 26, 2014 by and among Hologic, Inc., the guarantors party thereto, Goldman Sachs Bank USA, and the lenders party thereto. |  | 8-K |  | 2/26/2014
10.2† |  | Offer Letter by and between Eric B. Compton and Hologic, Inc., dated March 9, 2014. |  | 8-K |  | 3/14/2014
10.3† |  | Severance and Change of Control Agreement by and between Eric B. Compton and Hologic, Inc., dated March 9, 2014. |  | 8-K |  | 3/14/2014
10.4† |  | Transition Agreement by and between Glenn P. Muir and Hologic, Inc., dated March 13, 2014. |  | 8-K |  | 3/14/2014
10.5*† |  | Transition and Severance Agreement by and between David P. Harding and Hologic, Inc., dated May 1, 2014. |  |  |  |
10.6*† |  | Settlement and Release Agreement by and between David P. Harding and Hologic, Inc., dated May 1, 2014. |  |  |  |
31.1* |  | Certification of Hologic’s CEO pursuant to Item 601(b)(31) of Regulation S-K, as adopted pursuant to Section 302 of the Sarbanes-Oxley Act of 2002. |  |  |  |
31.2* |  | Certification of Hologic’s CFO pursuant to Item 601(b)(31) of Regulation S-K, as adopted pursuant to Section 302 of the Sarbanes-Oxley Act of 2002. |  |  |  |
32.1** |  | Certification of Hologic’s CEO pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of 2002. |  |  |  |
32.2** |  | Certification of Hologic’s CFO pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of 2002. |  |  |  |
101.INS* |  | XBRL Instance Document |  |  |  |
101.SCH* |  | XBRL Taxonomy Extension Schema Document |  |  |  |
101.CAL* |  | XBRL Taxonomy Extension Calculation Linkbase Document |  |  |  |
101.LAB* |  | XBRL Taxonomy Extension Label Linkbase Document |  |  |  |
101.PRE* |  | XBRL Taxonomy Extension Presentation Linkbase Document |  |  |  |
101.DEF* |  | XBRL Taxonomy Extension Definition |  |  |  |

† | Indicates management contract or compensatory plan, contract or arrangement.

* | Filed herewith.

** | Furnished herewith.

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SIGNATURES

Pursuant to the requirements of the Securities Exchange Act of 1934, the registrant has duly caused this report to be signed on its behalf by the undersigned thereunto duly authorized.

|  |  |  | Hologic, Inc.
|  |  |  | (Registrant)
Date: May 2, 2014 |  |  |  | /s/ Stephen P. MacMillan
|  |  |  | Stephen P. MacMillan
|  |  |  | President and Chief Executive Officer
Date: May 2, 2014 |  |  |  | /s/ Glenn P. Muir
|  |  |  | Glenn P. Muir
|  |  |  | Executive Vice President, Finance and Administration, and Chief Financial Officer
|  |  |  | (Principal Financial Officer)

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