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CONDENSED CONSOLIDATED STATEMENTS OF OPERATIONS - USD ($)
shares in Thousands, $ in Thousands
3 Months Ended 6 Months Ended
Jun. 30, 2019
Jun. 30, 2018
Jun. 30, 2019
Jun. 30, 2018
Revenues [Abstract]        
Contract and other revenue $ 58,297 $ 56,458 $ 106,681 $ 102,884
Operating costs and expenses:        
Cost of Goods and Services Sold [1] 6,310 4,199 10,737 8,556
Cost of contract and other revenue 6,717 11,089 13,488 23,211
Research and development [1] 37,890 37,696 78,509 77,813
Sales, general and administrative [1] 24,908 24,483 52,553 54,681
Restructuring charges (recoveries) 2,528 (1,022) 2,859 2,223
Impairment of Long-Lived Assets to be Disposed of 16,990 0 16,990 0
Total operating costs and expenses 95,343 76,445 175,136 166,484
Operating income (loss) (37,046) (19,987) (68,455) (63,600)
Interest income and other income (expense), net 6,972 8,249 14,385 17,365
Interest expense (2,534) (4,634) (4,805) (9,055)
Interest and other income (expense), net 4,438 3,615 9,580 8,310
Loss before income taxes (32,608) (16,372) (58,875) (55,290)
Provision for (benefit from) income taxes 4,372 (1,015) 4,681 (4,244)
Net Income (Loss) $ (36,980) $ (15,357) $ (63,556) $ (51,046)
Net loss per share:        
Earnings Per Share, Basic $ (0.33) $ (0.14) $ (0.58) $ (0.47)
Earnings Per Share, Diluted $ (0.33) $ (0.14) $ (0.58) $ (0.47)
Weighted average shares used in per share calculation:        
Basic (in shares) 110,875 107,737 110,287 108,542
Diluted (in shares) 110,875 107,737 110,287 108,542
Royalty [Member]        
Revenues [Abstract]        
Contract and other revenue $ 27,050 $ 30,049 $ 51,903 $ 51,423
Product Revenue [Member]        
Revenues [Abstract]        
Contract and other revenue 16,031 8,087 24,995 15,400
Contract and other Revenue [Member]        
Revenues [Abstract]        
Contract and other revenue $ 15,216 $ 18,322 $ 29,783 $ 36,061
[1] Includes stock-based compensation:
Cost of product revenue
$
1

 
$
2

 
$
2

 
$
5

Research and development
$
3,058

 
$
3,286

 
$
6,268

 
$
6,478

Sales, general and administrative
$
4,021

 
$
(1,400
)
 
$
7,999

 
$
2,919