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Organization and Summary of Significant Accounting Policies (Tables)
 6 Months Ended
Jun. 29, 2018
Organization, Consolidation and Presentation of Financial Statements [Abstract]  
Impact of Adoption of Topic 606
The impact of the adoption of Topic 606 on the accompanying Condensed Consolidated Balance Sheet as of January 1, 2018 was as follows (in thousands):
 
December 31, 2017
 
Adjustments Due to the Adoption of Topic 606
 
January 1, 2018
Contract assets: unbilled collaboration revenue, gross:
 
 
 
 
 
Current portion
$
—

 
$
9,588

 
$
9,588

Long-term portion
$
—

 
$
12,247

 
$
12,247

Contract liabilities: deferred revenue, gross:
 
 
 
 
 
Current portion
$
31,984

 
$
(23,591
)
 
$
8,393

Long-term portion
$
238,520

 
$
(213,079
)
 
$
25,441

Accumulated deficit
$
(1,829,172
)
 
$
258,505

 
$
(1,570,667
)
The impact of the adoption of Topic 606 on the accompanying Condensed Consolidated Statements of Operations as of and for three and six months ended June 30, 2018 were as follows (in thousands):
 
Three Months Ended June 30, 2018
 
As Reported
 
Balances Without the Adoption of Topic 606
 
Effect of Adoption
Higher / (Lower)
Collaboration revenues
$
40,272

 
$
94,420

 
$
(54,148
)
Total revenues
$
186,108

 
$
240,256

 
$
(54,148
)
Income before income taxes
$
88,395

 
$
142,543

 
$
(54,148
)
Provision for income taxes
$
901

 
$
1,906

 
$
(1,005
)
Net income
$
87,494

 
$
140,637

 
$
(53,143
)
Net income per share, basic
$
0.29

 
$
0.47

 
$
(0.18
)
Net income per share, diluted
$
0.28

 
$
0.45

 
$
(0.17
)