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Mergers and Acquisitions - Pro Forma Financial Information (Details) (USD $) In Thousands, unless otherwise specified | 3 Months Ended
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Mar. 31, 2015 | Mar. 31, 2014
Business Acquisition, Pro Forma Information, Nonrecurring Adjustment [Line Items] |  |
Income before income taxes | $ 26,599 us-gaap_IncomeLossFromContinuingOperationsBeforeIncomeTaxesExtraordinaryItemsNoncontrollingInterest | $ 3,555 us-gaap_IncomeLossFromContinuingOperationsBeforeIncomeTaxesExtraordinaryItemsNoncontrollingInterest
Net income | 25,804 us-gaap_ProfitLoss | 3,249 us-gaap_ProfitLoss
Net loss attributable to the noncontrolling interests | 1,293 us-gaap_NetIncomeLossAttributableToNoncontrollingInterest | 866 us-gaap_NetIncomeLossAttributableToNoncontrollingInterest
2015 Business Acquisitions | Pro Forma |  |
Business Acquisition, Pro Forma Information, Nonrecurring Adjustment [Line Items] |  |
Revenues | 33,927 us-gaap_BusinessAcquisitionsProFormaRevenue / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember | 7,854 us-gaap_BusinessAcquisitionsProFormaRevenue / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember
Income before income taxes | 23,282 us-gaap_IncomeLossFromContinuingOperationsBeforeIncomeTaxesExtraordinaryItemsNoncontrollingInterest / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember | 1,582 us-gaap_IncomeLossFromContinuingOperationsBeforeIncomeTaxesExtraordinaryItemsNoncontrollingInterest / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember
Net income | 22,487 us-gaap_ProfitLoss / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember | 1,276 us-gaap_ProfitLoss / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember
Net loss attributable to the noncontrolling interests | 1,293 us-gaap_NetIncomeLossAttributableToNoncontrollingInterest / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember | 866 us-gaap_NetIncomeLossAttributableToNoncontrollingInterest / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember
Net loss attributable to Intrexon | 23,780 us-gaap_BusinessAcquisitionsProFormaNetIncomeLoss / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember | 2,142 us-gaap_BusinessAcquisitionsProFormaNetIncomeLoss / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember
2014 Business Acquisitions | Pro Forma |  |
Business Acquisition, Pro Forma Information, Nonrecurring Adjustment [Line Items] |  |
Revenues |  | 22,211 us-gaap_BusinessAcquisitionsProFormaRevenue / us-gaap_BusinessAcquisitionAxis = xon_A2014BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember
Income before income taxes |  | 1,319 us-gaap_IncomeLossFromContinuingOperationsBeforeIncomeTaxesExtraordinaryItemsNoncontrollingInterest / us-gaap_BusinessAcquisitionAxis = xon_A2014BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember
Net income |  | 1,013 us-gaap_ProfitLoss / us-gaap_BusinessAcquisitionAxis = xon_A2014BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember
Net loss attributable to the noncontrolling interests |  | 976 us-gaap_NetIncomeLossAttributableToNoncontrollingInterest / us-gaap_BusinessAcquisitionAxis = xon_A2014BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember
Net loss attributable to Intrexon |  | $ 1,989 us-gaap_BusinessAcquisitionsProFormaNetIncomeLoss / us-gaap_BusinessAcquisitionAxis = xon_A2014BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember

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