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Consolidated Statements of Shareholders' and Total Equity (USD $) In Thousands, except Share data, unless otherwise specified | Total USD ($) | Common Stock | Additional Paid-in Capital USD ($) | Accumulated Other Comprehensive Loss USD ($) | Accumulated Deficit USD ($) | Total Intrexon Shareholders' Equity USD ($) | Noncontrolling Interests USD ($)
--- | --- | --- | --- | --- | --- | --- | ---
Balances at Dec. 31, 2014 | $ 409,289 us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest |  | $ 843,001 us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest / us-gaap_StatementEquityComponentsAxis = us-gaap_AdditionalPaidInCapitalMember | $ (4)us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest / us-gaap_StatementEquityComponentsAxis = us-gaap_AccumulatedOtherComprehensiveIncomeMember | $ (458,236)us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest / us-gaap_StatementEquityComponentsAxis = us-gaap_RetainedEarningsMember | $ 384,761 us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest / us-gaap_StatementEquityComponentsAxis = us-gaap_ParentMember | $ 24,528 us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest / us-gaap_StatementEquityComponentsAxis = us-gaap_NoncontrollingInterestMember
Balances (in shares) at Dec. 31, 2014 | 100,557,932 us-gaap_CommonStockSharesOutstanding | 100,557,932 us-gaap_CommonStockSharesOutstanding / us-gaap_StatementEquityComponentsAxis = us-gaap_CommonStockMember |  |  |  |  |
Increase (Decrease) in Stockholders' Equity [Roll Forward] |  |  |  |  |  |  |
Stock-based compensation expense | 10,259 us-gaap_AdjustmentsToAdditionalPaidInCapitalShareBasedCompensationStockOptionsRequisiteServicePeriodRecognition |  | 10,156 us-gaap_AdjustmentsToAdditionalPaidInCapitalShareBasedCompensationStockOptionsRequisiteServicePeriodRecognition / us-gaap_StatementEquityComponentsAxis = us-gaap_AdditionalPaidInCapitalMember |  |  | 10,156 us-gaap_AdjustmentsToAdditionalPaidInCapitalShareBasedCompensationStockOptionsRequisiteServicePeriodRecognition / us-gaap_StatementEquityComponentsAxis = us-gaap_ParentMember | 103 us-gaap_AdjustmentsToAdditionalPaidInCapitalShareBasedCompensationStockOptionsRequisiteServicePeriodRecognition / us-gaap_StatementEquityComponentsAxis = us-gaap_NoncontrollingInterestMember
Exercises of stock options and warrants | 2,567 us-gaap_StockIssuedDuringPeriodValueStockOptionsExercised |  | 2,567 us-gaap_StockIssuedDuringPeriodValueStockOptionsExercised / us-gaap_StatementEquityComponentsAxis = us-gaap_AdditionalPaidInCapitalMember |  |  | 2,567 us-gaap_StockIssuedDuringPeriodValueStockOptionsExercised / us-gaap_StatementEquityComponentsAxis = us-gaap_ParentMember | 0 us-gaap_StockIssuedDuringPeriodValueStockOptionsExercised / us-gaap_StatementEquityComponentsAxis = us-gaap_NoncontrollingInterestMember
Exercises of stock options and warrants, shares |  | 269,487 us-gaap_StockIssuedDuringPeriodSharesStockOptionsExercised / us-gaap_StatementEquityComponentsAxis = us-gaap_CommonStockMember |  |  |  |  |
Shares issued to nonemployee members of the Board of Directors | 480 xon_StockIssuedDuringPeriodValueNonemployeeDirector |  | 480 xon_StockIssuedDuringPeriodValueNonemployeeDirector / us-gaap_StatementEquityComponentsAxis = us-gaap_AdditionalPaidInCapitalMember |  |  | 480 xon_StockIssuedDuringPeriodValueNonemployeeDirector / us-gaap_StatementEquityComponentsAxis = us-gaap_ParentMember |
Shares issued to nonemployee members of the Board of Directors (in shares) |  | 10,106 xon_StockIssuedDuringPeriodSharesNonemployeeDirector / us-gaap_StatementEquityComponentsAxis = us-gaap_CommonStockMember |  |  |  |  |
Shares issued in public offering, net of offering costs (in shares) |  | 4,312,500 us-gaap_StockIssuedDuringPeriodSharesNewIssues / us-gaap_StatementEquityComponentsAxis = us-gaap_CommonStockMember |  |  |  |  |
Shares issued in public offering, net of offering costs | 110,041 us-gaap_StockIssuedDuringPeriodValueNewIssues |  | 110,041 us-gaap_StockIssuedDuringPeriodValueNewIssues / us-gaap_StatementEquityComponentsAxis = us-gaap_AdditionalPaidInCapitalMember |  |  | 110,041 us-gaap_StockIssuedDuringPeriodValueNewIssues / us-gaap_StatementEquityComponentsAxis = us-gaap_ParentMember |
Shares issued as consideration of license agreement (in shares) |  | 2,100,085 xon_StockIssuedDuringPeriodSharesIssuedforLicenseAgreement / us-gaap_StatementEquityComponentsAxis = us-gaap_CommonStockMember |  |  |  |  |
Shares issued as consideration of license agreement | 59,579 xon_StockIssuedDuringPeriodValueIssuedforLicenseAgreement |  | 59,579 xon_StockIssuedDuringPeriodValueIssuedforLicenseAgreement / us-gaap_StatementEquityComponentsAxis = us-gaap_AdditionalPaidInCapitalMember |  |  | 59,579 xon_StockIssuedDuringPeriodValueIssuedforLicenseAgreement / us-gaap_StatementEquityComponentsAxis = us-gaap_ParentMember |
Shares issued in acquisitions (in shares) |  | 965,377 us-gaap_StockIssuedDuringPeriodSharesAcquisitions / us-gaap_StatementEquityComponentsAxis = us-gaap_CommonStockMember |  |  |  |  |
Shares issued in acquisitions | 39,735 us-gaap_StockIssuedDuringPeriodValueAcquisitions |  | 39,735 us-gaap_StockIssuedDuringPeriodValueAcquisitions / us-gaap_StatementEquityComponentsAxis = us-gaap_AdditionalPaidInCapitalMember |  |  | 39,735 us-gaap_StockIssuedDuringPeriodValueAcquisitions / us-gaap_StatementEquityComponentsAxis = us-gaap_ParentMember |
Acquisition of noncontrolling interest (in shares) |  | 307,074 xon_StockIssuedDuringPeriodSharesAcquisitionsofNoncontrollingInterests / us-gaap_StatementEquityComponentsAxis = us-gaap_CommonStockMember |  |  |  |  |
Acquisition of noncontrolling interest | (1,566)us-gaap_MinorityInterestDecreaseFromRedemptions |  | 9,412 us-gaap_MinorityInterestDecreaseFromRedemptions / us-gaap_StatementEquityComponentsAxis = us-gaap_AdditionalPaidInCapitalMember |  |  | 9,412 us-gaap_MinorityInterestDecreaseFromRedemptions / us-gaap_StatementEquityComponentsAxis = us-gaap_ParentMember | (10,978)us-gaap_MinorityInterestDecreaseFromRedemptions / us-gaap_StatementEquityComponentsAxis = us-gaap_NoncontrollingInterestMember
Adjustments for noncontrolling interests | 250 xon_Adjustmentsfornoncontrollinginterests |  | (27)xon_Adjustmentsfornoncontrollinginterests / us-gaap_StatementEquityComponentsAxis = us-gaap_AdditionalPaidInCapitalMember |  |  | (27)xon_Adjustmentsfornoncontrollinginterests / us-gaap_StatementEquityComponentsAxis = us-gaap_ParentMember | 277 xon_Adjustmentsfornoncontrollinginterests / us-gaap_StatementEquityComponentsAxis = us-gaap_NoncontrollingInterestMember
Net income (loss) | 25,804 us-gaap_ProfitLoss |  |  |  | 27,097 us-gaap_ProfitLoss / us-gaap_StatementEquityComponentsAxis = us-gaap_RetainedEarningsMember | 27,097 us-gaap_ProfitLoss / us-gaap_StatementEquityComponentsAxis = us-gaap_ParentMember | (1,293)us-gaap_ProfitLoss / us-gaap_StatementEquityComponentsAxis = us-gaap_NoncontrollingInterestMember
Other comprehensive income (loss) | (3,093)us-gaap_OtherComprehensiveIncomeLossNetOfTax |  |  | (3,133)us-gaap_OtherComprehensiveIncomeLossNetOfTax / us-gaap_StatementEquityComponentsAxis = us-gaap_AccumulatedOtherComprehensiveIncomeMember |  | (3,133)us-gaap_OtherComprehensiveIncomeLossNetOfTax / us-gaap_StatementEquityComponentsAxis = us-gaap_ParentMember | 40 us-gaap_OtherComprehensiveIncomeLossNetOfTax / us-gaap_StatementEquityComponentsAxis = us-gaap_NoncontrollingInterestMember
Balances at Mar. 31, 2015 | $ 653,345 us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest |  | $ 1,074,944 us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest / us-gaap_StatementEquityComponentsAxis = us-gaap_AdditionalPaidInCapitalMember | $ (3,137)us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest / us-gaap_StatementEquityComponentsAxis = us-gaap_AccumulatedOtherComprehensiveIncomeMember | $ (431,139)us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest / us-gaap_StatementEquityComponentsAxis = us-gaap_RetainedEarningsMember | $ 640,668 us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest / us-gaap_StatementEquityComponentsAxis = us-gaap_ParentMember | $ 12,677 us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest / us-gaap_StatementEquityComponentsAxis = us-gaap_NoncontrollingInterestMember
Balances (in shares) at Mar. 31, 2015 | 108,522,561 us-gaap_CommonStockSharesOutstanding | 108,522,561 us-gaap_CommonStockSharesOutstanding / us-gaap_StatementEquityComponentsAxis = us-gaap_CommonStockMember |  |  |  |  |

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