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Consolidated Balance Sheets (USD $)
In Thousands, unless otherwise specified
Mar. 31, 2015
Dec. 31, 2014
Current assets    
Cash and cash equivalents $ 99,015us-gaap_CashAndCashEquivalentsAtCarryingValue $ 27,466us-gaap_CashAndCashEquivalentsAtCarryingValue
Short-term investments 82,461us-gaap_ShortTermInvestments 88,495us-gaap_ShortTermInvestments
Receivables    
Trade, net 15,001us-gaap_AccountsReceivableNetCurrent 14,582us-gaap_AccountsReceivableNetCurrent
Related parties 9,795us-gaap_DueFromRelatedPartiesCurrent 12,622us-gaap_DueFromRelatedPartiesCurrent
Note 1,517us-gaap_NotesAndLoansReceivableGrossCurrent 1,501us-gaap_NotesAndLoansReceivableGrossCurrent
Other 766us-gaap_AccountsAndOtherReceivablesNetCurrent 559us-gaap_AccountsAndOtherReceivablesNetCurrent
Inventory 26,171us-gaap_InventoryGross 25,789us-gaap_InventoryGross
Prepaid expenses and other 4,073us-gaap_PrepaidExpenseAndOtherAssetsCurrent 3,759us-gaap_PrepaidExpenseAndOtherAssetsCurrent
Total current assets 238,799us-gaap_AssetsCurrent 174,773us-gaap_AssetsCurrent
Long-term investments 9,049us-gaap_AvailableForSaleSecuritiesNoncurrent 27,113us-gaap_AvailableForSaleSecuritiesNoncurrent
Equity securities 294,922us-gaap_OtherMarketableSecuritiesNoncurrent 164,889us-gaap_OtherMarketableSecuritiesNoncurrent
Property, plant and equipment, net 38,015us-gaap_PropertyPlantAndEquipmentNet 38,000us-gaap_PropertyPlantAndEquipmentNet
Intangible assets, net 129,308us-gaap_IntangibleAssetsNetExcludingGoodwill 65,947us-gaap_IntangibleAssetsNetExcludingGoodwill
Goodwill 104,045us-gaap_Goodwill 101,059us-gaap_Goodwill
Investments in affiliates 3,024us-gaap_EquityMethodInvestments 3,220us-gaap_EquityMethodInvestments
Other assets 2,825us-gaap_OtherAssetsNoncurrent 1,271us-gaap_OtherAssetsNoncurrent
Total assets 819,987us-gaap_Assets 576,272us-gaap_Assets
Current liabilities    
Accounts payable 6,904us-gaap_AccountsPayableCurrent 6,267us-gaap_AccountsPayableCurrent
Accrued compensation and benefits 8,029us-gaap_EmployeeRelatedLiabilitiesCurrent 7,736us-gaap_EmployeeRelatedLiabilitiesCurrent
Other accrued liabilities 7,072us-gaap_OtherAccruedLiabilitiesCurrent 5,731us-gaap_OtherAccruedLiabilitiesCurrent
Deferred revenue 17,289us-gaap_DeferredRevenueCurrent 16,522us-gaap_DeferredRevenueCurrent
Lines of credit 621us-gaap_LinesOfCreditCurrent 2,273us-gaap_LinesOfCreditCurrent
Current portion of long term debt 1,426us-gaap_LongTermDebtCurrent 1,675us-gaap_LongTermDebtCurrent
Current portion of deferred consideration 7,310xon_DeferredConsiderationCurrent 7,064xon_DeferredConsiderationCurrent
Related party payables 52us-gaap_DueToRelatedPartiesCurrent 214us-gaap_DueToRelatedPartiesCurrent
Total current liabilities 48,703us-gaap_LiabilitiesCurrent 47,482us-gaap_LiabilitiesCurrent
Long term debt, net of current portion 8,300us-gaap_LongTermDebtNoncurrent 8,694us-gaap_LongTermDebtNoncurrent
Deferred consideration, net of current portion 13,406xon_DeferredConsiderationNoncurrent 13,421xon_DeferredConsiderationNoncurrent
Deferred revenue, net of current portion 93,998us-gaap_DeferredRevenueNoncurrent 96,687us-gaap_DeferredRevenueNoncurrent
Deferred tax liability 1,379us-gaap_DeferredTaxLiabilitiesNoncurrent 0us-gaap_DeferredTaxLiabilitiesNoncurrent
Other long term liabilities 856us-gaap_OtherLiabilitiesNoncurrent 699us-gaap_OtherLiabilitiesNoncurrent
Total liabilities 166,642us-gaap_Liabilities 166,983us-gaap_Liabilities
Commitments and contingencies (Note 16)      
Total equity    
Common stock, no par value, 200,000,000 shares authorized as of March 31, 2015 and December 31, 2014; 108,522,561 and 100,557,932 shares issued and outstanding as of March 31, 2015 and December 31, 2014, respectively 0us-gaap_CommonStockValueOutstanding 0us-gaap_CommonStockValueOutstanding
Additional paid-in capital 1,074,944us-gaap_AdditionalPaidInCapital 843,001us-gaap_AdditionalPaidInCapital
Accumulated deficit (431,139)us-gaap_RetainedEarningsAccumulatedDeficit (458,236)us-gaap_RetainedEarningsAccumulatedDeficit
Accumulated other comprehensive loss (3,137)us-gaap_AccumulatedOtherComprehensiveIncomeLossNetOfTax (4)us-gaap_AccumulatedOtherComprehensiveIncomeLossNetOfTax
Total Intrexon shareholders' equity 640,668us-gaap_StockholdersEquity 384,761us-gaap_StockholdersEquity
Noncontrolling interests 12,677us-gaap_MinorityInterest 24,528us-gaap_MinorityInterest
Total equity 653,345us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest 409,289us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest
Total liabilities and total equity $ 819,987us-gaap_LiabilitiesAndStockholdersEquity $ 576,272us-gaap_LiabilitiesAndStockholdersEquity