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Mergers and Acquisitions - Pro Forma Financial Information (Details) (USD $) In Thousands, unless otherwise specified	3 Months Ended
	Mar. 31, 2015	Mar. 31, 2014
Business Acquisition, Pro Forma Information, Nonrecurring Adjustment [Line Items]
Income before income taxes	$ 26,599us-gaap_IncomeLossFromContinuingOperationsBeforeIncomeTaxesExtraordinaryItemsNoncontrollingInterest	$ 3,555us-gaap_IncomeLossFromContinuingOperationsBeforeIncomeTaxesExtraordinaryItemsNoncontrollingInterest
Net income	25,804us-gaap_ProfitLoss	3,249us-gaap_ProfitLoss
Net loss attributable to the noncontrolling interests	1,293us-gaap_NetIncomeLossAttributableToNoncontrollingInterest	866us-gaap_NetIncomeLossAttributableToNoncontrollingInterest
2015 Business Acquisitions | Pro Forma
Business Acquisition, Pro Forma Information, Nonrecurring Adjustment [Line Items]
Revenues	33,927us-gaap_BusinessAcquisitionsProFormaRevenue / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember	7,854us-gaap_BusinessAcquisitionsProFormaRevenue / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember
Income before income taxes	23,282us-gaap_IncomeLossFromContinuingOperationsBeforeIncomeTaxesExtraordinaryItemsNoncontrollingInterest / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember	1,582us-gaap_IncomeLossFromContinuingOperationsBeforeIncomeTaxesExtraordinaryItemsNoncontrollingInterest / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember
Net income	22,487us-gaap_ProfitLoss / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember	1,276us-gaap_ProfitLoss / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember
Net loss attributable to the noncontrolling interests	1,293us-gaap_NetIncomeLossAttributableToNoncontrollingInterest / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember	866us-gaap_NetIncomeLossAttributableToNoncontrollingInterest / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember
Net loss attributable to Intrexon	23,780us-gaap_BusinessAcquisitionsProFormaNetIncomeLoss / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember	2,142us-gaap_BusinessAcquisitionsProFormaNetIncomeLoss / us-gaap_BusinessAcquisitionAxis = xon_A2015BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember
2014 Business Acquisitions | Pro Forma
Business Acquisition, Pro Forma Information, Nonrecurring Adjustment [Line Items]
Revenues		22,211us-gaap_BusinessAcquisitionsProFormaRevenue / us-gaap_BusinessAcquisitionAxis = xon_A2014BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember
Income before income taxes		1,319us-gaap_IncomeLossFromContinuingOperationsBeforeIncomeTaxesExtraordinaryItemsNoncontrollingInterest / us-gaap_BusinessAcquisitionAxis = xon_A2014BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember
Net income		1,013us-gaap_ProfitLoss / us-gaap_BusinessAcquisitionAxis = xon_A2014BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember
Net loss attributable to the noncontrolling interests		976us-gaap_NetIncomeLossAttributableToNoncontrollingInterest / us-gaap_BusinessAcquisitionAxis = xon_A2014BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember
Net loss attributable to Intrexon		$ 1,989us-gaap_BusinessAcquisitionsProFormaNetIncomeLoss / us-gaap_BusinessAcquisitionAxis = xon_A2014BusinessAcquisitionsMember / us-gaap_StatementScenarioAxis = us-gaap_ProFormaMember

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The pro forma net Income or Loss for the period as if the business combination or combinations had been completed at the beginning of a period.

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