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Consolidated Statements of Shareholders' and Total Equity (USD $)
In Thousands, except Share data, unless otherwise specified
Total
USD ($)
Common Stock
Additional Paid-in Capital
USD ($)
Accumulated Other Comprehensive Loss
USD ($)
Accumulated Deficit
USD ($)
Total Intrexon Shareholders' Equity
USD ($)
Noncontrolling Interests
USD ($)
Balances at Dec. 31, 2014 $ 409,289us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest   $ 843,001us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_AdditionalPaidInCapitalMember		 $ (4)us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_AccumulatedOtherComprehensiveIncomeMember		 $ (458,236)us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_RetainedEarningsMember		 $ 384,761us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_ParentMember		 $ 24,528us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_NoncontrollingInterestMember
Balances (in shares) at Dec. 31, 2014 100,557,932us-gaap_CommonStockSharesOutstanding 100,557,932us-gaap_CommonStockSharesOutstanding
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_CommonStockMember		          
Increase (Decrease) in Stockholders' Equity [Roll Forward]              
Stock-based compensation expense 10,259us-gaap_AdjustmentsToAdditionalPaidInCapitalShareBasedCompensationStockOptionsRequisiteServicePeriodRecognition   10,156us-gaap_AdjustmentsToAdditionalPaidInCapitalShareBasedCompensationStockOptionsRequisiteServicePeriodRecognition
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_AdditionalPaidInCapitalMember		     10,156us-gaap_AdjustmentsToAdditionalPaidInCapitalShareBasedCompensationStockOptionsRequisiteServicePeriodRecognition
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_ParentMember		 103us-gaap_AdjustmentsToAdditionalPaidInCapitalShareBasedCompensationStockOptionsRequisiteServicePeriodRecognition
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_NoncontrollingInterestMember
Exercises of stock options and warrants 2,567us-gaap_StockIssuedDuringPeriodValueStockOptionsExercised   2,567us-gaap_StockIssuedDuringPeriodValueStockOptionsExercised
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_AdditionalPaidInCapitalMember		     2,567us-gaap_StockIssuedDuringPeriodValueStockOptionsExercised
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_ParentMember		 0us-gaap_StockIssuedDuringPeriodValueStockOptionsExercised
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_NoncontrollingInterestMember
Exercises of stock options and warrants, shares   269,487us-gaap_StockIssuedDuringPeriodSharesStockOptionsExercised
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_CommonStockMember		          
Shares issued to nonemployee members of the Board of Directors 480xon_StockIssuedDuringPeriodValueNonemployeeDirector   480xon_StockIssuedDuringPeriodValueNonemployeeDirector
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_AdditionalPaidInCapitalMember		     480xon_StockIssuedDuringPeriodValueNonemployeeDirector
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_ParentMember		  
Shares issued to nonemployee members of the Board of Directors (in shares)   10,106xon_StockIssuedDuringPeriodSharesNonemployeeDirector
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_CommonStockMember		          
Shares issued in public offering, net of offering costs (in shares)   4,312,500us-gaap_StockIssuedDuringPeriodSharesNewIssues
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_CommonStockMember		          
Shares issued in public offering, net of offering costs 110,041us-gaap_StockIssuedDuringPeriodValueNewIssues   110,041us-gaap_StockIssuedDuringPeriodValueNewIssues
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_AdditionalPaidInCapitalMember		     110,041us-gaap_StockIssuedDuringPeriodValueNewIssues
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_ParentMember		  
Shares issued as consideration of license agreement (in shares)   2,100,085xon_StockIssuedDuringPeriodSharesIssuedforLicenseAgreement
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_CommonStockMember		          
Shares issued as consideration of license agreement 59,579xon_StockIssuedDuringPeriodValueIssuedforLicenseAgreement   59,579xon_StockIssuedDuringPeriodValueIssuedforLicenseAgreement
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_AdditionalPaidInCapitalMember		     59,579xon_StockIssuedDuringPeriodValueIssuedforLicenseAgreement
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_ParentMember		  
Shares issued in acquisitions (in shares)   965,377us-gaap_StockIssuedDuringPeriodSharesAcquisitions
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_CommonStockMember		          
Shares issued in acquisitions 39,735us-gaap_StockIssuedDuringPeriodValueAcquisitions   39,735us-gaap_StockIssuedDuringPeriodValueAcquisitions
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_AdditionalPaidInCapitalMember		     39,735us-gaap_StockIssuedDuringPeriodValueAcquisitions
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_ParentMember		  
Acquisition of noncontrolling interest (in shares)   307,074xon_StockIssuedDuringPeriodSharesAcquisitionsofNoncontrollingInterests
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_CommonStockMember		          
Acquisition of noncontrolling interest (1,566)us-gaap_MinorityInterestDecreaseFromRedemptions   9,412us-gaap_MinorityInterestDecreaseFromRedemptions
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_AdditionalPaidInCapitalMember		     9,412us-gaap_MinorityInterestDecreaseFromRedemptions
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_ParentMember		 (10,978)us-gaap_MinorityInterestDecreaseFromRedemptions
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_NoncontrollingInterestMember
Adjustments for noncontrolling interests 250xon_Adjustmentsfornoncontrollinginterests   (27)xon_Adjustmentsfornoncontrollinginterests
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_AdditionalPaidInCapitalMember		     (27)xon_Adjustmentsfornoncontrollinginterests
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_ParentMember		 277xon_Adjustmentsfornoncontrollinginterests
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_NoncontrollingInterestMember
Net income (loss) 25,804us-gaap_ProfitLoss       27,097us-gaap_ProfitLoss
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_RetainedEarningsMember		 27,097us-gaap_ProfitLoss
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_ParentMember		 (1,293)us-gaap_ProfitLoss
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_NoncontrollingInterestMember
Other comprehensive income (loss) (3,093)us-gaap_OtherComprehensiveIncomeLossNetOfTax     (3,133)us-gaap_OtherComprehensiveIncomeLossNetOfTax
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_AccumulatedOtherComprehensiveIncomeMember		   (3,133)us-gaap_OtherComprehensiveIncomeLossNetOfTax
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_ParentMember		 40us-gaap_OtherComprehensiveIncomeLossNetOfTax
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_NoncontrollingInterestMember
Balances at Mar. 31, 2015 $ 653,345us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest   $ 1,074,944us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_AdditionalPaidInCapitalMember		 $ (3,137)us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_AccumulatedOtherComprehensiveIncomeMember		 $ (431,139)us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_RetainedEarningsMember		 $ 640,668us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_ParentMember		 $ 12,677us-gaap_StockholdersEquityIncludingPortionAttributableToNoncontrollingInterest
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_NoncontrollingInterestMember
Balances (in shares) at Mar. 31, 2015 108,522,561us-gaap_CommonStockSharesOutstanding 108,522,561us-gaap_CommonStockSharesOutstanding
/ us-gaap_StatementEquityComponentsAxis
= us-gaap_CommonStockMember