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Mergers and Acquisitions - 2014 Acquisitions - Pro Forma Financial Information (Details) - USD ($) $ in Thousands | 3 Months Ended | 12 Months Ended
--- | --- | ---
Dec. 31, 2016 | Sep. 30, 2016 | Jun. 30, 2016 | Mar. 31, 2016 | Dec. 31, 2015 | Sep. 30, 2015 | Jun. 30, 2015 | Mar. 31, 2015 | Dec. 31, 2016 | Dec. 31, 2015 | Dec. 31, 2014
Business Acquisition [Line Items] |  |  |  |  |  |  |  |  |  |  |
Loss before income taxes |  |  |  |  |  |  |  |  | $ (194,151) | $ (86,978) | $ (85,719)
Net loss | $ (44,912) | $ (30,011) | $ (50,031) | $ (65,320) | $ (33,275) | $ (39,029) | $ (41,494) | $ 25,804 | (190,274) | (87,994) | (85,616)
Net loss attributable to the noncontrolling interests |  |  |  |  |  |  |  |  | $ 3,662 | $ 3,501 | 3,794
Pro Forma | 2014 Business Acquisitions |  |  |  |  |  |  |  |  |  |  |
Business Acquisition [Line Items] |  |  |  |  |  |  |  |  |  |  |
Revenues |  |  |  |  |  |  |  |  |  |  | 119,721
Loss before income taxes |  |  |  |  |  |  |  |  |  |  | (82,041)
Net loss |  |  |  |  |  |  |  |  |  |  | (81,938)
Net loss attributable to the noncontrolling interests |  |  |  |  |  |  |  |  |  |  | 4,159
Net loss attributable to Intrexon |  |  |  |  |  |  |  |  |  |  | $ (77,779)

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