Exhibit 23.1
Consent of Independent Registered Public Accounting Firm
We consent to the reference to our firm under the caption “Experts” and to the use of our report
dated April 12, 2008 (except Note 16, as to which the date is
September , 2008) in Amendment No. 7 to the Registration
Statement (Form S-1 No. 333-150227) and related Prospectus of Fluidigm
Corporation for the registration of 6,095,000 shares of its common stock.
Palo Alto, California
September , 2008
The foregoing consent is in the form
that will be signed upon completion of the reverse stock split described in Note 16 to the
consolidated financial statements.
Palo Alto, California
September 2, 2008