10-K 1 patr10k13.htm PATR 2013 FORM 10-K

UNITED STATES
SECURITIES AND EXCHANGE COMMISSION

Washington, D.C. 20549

_________________

FORM 10-K

_________________

(Mark One) |  |

[X] | ANNUAL REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the fiscal year ended September 30, 2013. |

or

[_] | TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 |

Commission File Number: 33-26115

_____________________

PATRIOT TRANSPORTATION HOLDING, INC.

(Exact name of registrant as specified in its charter)

_____________________

FLORIDA |  | 59-2924957
(State or other jurisdiction of incorporation or organization) |  | (I.R.S. Employer Identification No.)
200 W. Forsyth St., 7th Floor, Jacksonville, Florida |  | 32202
(Address of principal executive offices) |  | (Zip Code)

(904) 396-5733

Securities registered pursuant to Section 12(b) of the Act:

Title of each class | Name of each exchange on which registered
Common Stock $.10 par value | NASDAQ

Securities registered pursuant to Section 12(g) of the Act: None

_________________

Indicate by check mark if the registrant is a well-known seasoned issuer, as defined in Rule 405 of the Securities Act. Yes [_] No [X]

Indicate by check mark if the registrant is not required to file reports pursuant to Section 13 or Section 15(d) of the Act. Yes [_] No [X]

Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days. Yes [X] No [_]

Indicate by check mark whether the registrant has submitted electronically and posted on its corporate Web site, if any, every Interactive Data File required to be submitted and posted pursuant to Rule 405 of Regulation S-T (§232.405 of this chapter) during the preceding 12 months (or for such shorter period that the registrant was required to submit and post such files). Yes [X] No [_]

Indicate by check mark if disclosure of delinquent filers pursuant to Item 405 of Regulation S-K (§229.405 of this chapter) is not contained herein, and will not be contained, to the best of registrant’s knowledge, in definitive proxy or information statements incorporated by reference in Part III of this Form 10-K or any amendment to this Form 10-K. [ ]

Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer, or a smaller reporting company. See the definitions of “large accelerated filer”, “accelerated filer” and “smaller reporting company” in Rule 12b-2 of the Exchange Act.

Large accelerated filer [_] |  | Accelerated filer [X]
Non-accelerated filer [_] | Smaller reporting company [_]

Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Act). Yes [_] No [X]

The number of shares of the registrant’s stock outstanding as of November 29, 2013 was 9,564,220. The aggregate market value of the shares of Common Stock held by non-affiliates of the registrant as of March 31, 2013, the last day of business of our most recently completed second fiscal quarter, was $155,436,836. Solely for purposes of this calculation, the registrant has assumed that all directors, officers and ten percent (10%) shareholders of the Company are affiliates of the registrant.

DOCUMENTS INCORPORATED BY REFERENCE

Portions of the Patriot Transportation Holding, Inc. 2013 Annual Report to Shareholders are incorporated by reference in Parts I and II.

Portions of the Patriot Transportation Holding, Inc. Proxy Statement which will be filed with the Securities and Exchange Commission not later than December 31, 2013 are incorporated by reference in Part III.

Preliminary Note Regarding Forward-Looking Statements.

Certain matters discussed in this report contain forward-looking statements that are subject to risks and uncertainties that could cause actual results to differ materially from those indicated by such forward-looking statements.

These forward-looking statements relate to, among other things, capital expenditures, liquidity, capital resources and competition and may be indicated by words or phrases such as ”anticipate”, ”estimate”, ”plans”, ”projects”, ”continuing”, ”ongoing”, ”expects”, ”management believes”, ”the Company believes”, ”the Company intends” and similar words or phrases. The following factors and others discussed in the Company’s periodic reports and filings with the Securities and Exchange Commission are among the principal factors that could cause actual results to differ materially from the forward-looking statements: freight demand for petroleum products including recessionary and terrorist impacts on travel in the Company’s markets; levels of construction activity in the markets served by our mining properties; fuel costs and the Company’s ability to recover fuel surcharges; accident severity and frequency; risk insurance markets; driver availability and cost; the impact of future regulations regarding the transportation industry; availability and terms of financing; competition; interest rates, inflation and general economic conditions; demand for flexible warehouse/office facilities in the Baltimore-Washington-Northern Virginia area; and ability to obtain zoning and entitlements necessary for property development. However, this list is not a complete statement of all potential risks or uncertainties.

These forward-looking statements are made as of the date hereof based on management’s current expectations, and the Company does not undertake an obligation to update such statements, whether as a result of new information, future events or otherwise. Additional information regarding these and other risk factors may be found in the Company’s other filings made from time to time with the Securities and Exchange Commission.

PART I

Item 1. BUSINESS.

Patriot Transportation Holding, Inc., which was incorporated in Florida in 1988, and its subsidiaries (the "Company") are engaged in the transportation and real estate businesses.

Our transportation business is conducted through Florida Rock & Tank Lines, Inc. ("Tank Lines") which operates in the Southeastern United States. Tank Lines hauls petroleum and other liquids and dry bulk commodities by tank trailers.

The Company’s real estate activities are conducted through two wholly owned subsidiaries: Florida Rock Properties, Inc. (“Properties”) and FRP Development Corp. (“Development”).

The Company’s real estate operations consist of two reportable segments. The mining royalty land segment owns real estate including construction aggregate royalty sites and parcels held for investment. The developed property rentals segment acquires, constructs, and leases office/warehouse buildings primarily in the Baltimore/Northern Virginia/Washington area and holds real estate for future development or related to its developments. Substantially all of the real estate operations are conducted within the Southeastern and Mid-Atlantic United States. Real estate revenues in fiscal 2013 were divided approximately 81% from rentals on developed properties and 19% from mining royalties.

Transportation. The transportation segment primarily serves customers in the petroleum industries in the Southeastern U.S.

During fiscal 2013, Tank Lines operated from terminals in Jacksonville, Orlando, Panama City, Pensacola, Port Everglades, Tampa and White Springs, Florida; Albany, Atlanta, Augusta, Bainbridge, Columbus, Macon and Savannah, Georgia; Chattanooga, Knoxville and Nashville, Tennessee; Birmingham and Montgomery, Alabama; Wilmington, North Carolina; and Spartanburg, South Carolina.

Tank Lines has from two to six major tank truck competitors in each of its markets. Price, service, and location are the major factors which affect competition in the transportation segment within a given market.

During fiscal 2013, the transportation segment’s ten largest customers accounted for approximately 54.2% of the transportation segment’s revenue. One of these customers, Murphy Oil Corporation, accounted for 20.0% of the transportation segment’s revenue. The loss of any one of these customers could have a material adverse effect on the Company’s revenues and income.

During fiscal 2013, the transportation segment purchased 96 new tractors and 33 trailers. In fiscal 2012 and 2011, the Company purchased 120 tractors and 51 trailers.

Our fiscal 2014 capital budget includes 90 new tractors and 30 new trailers including binding commitments to purchase 40 tractors and 6 trailers at September 30, 2013. We are replacing a larger than average number of tractors purchased prior to 2007 engine changes required by the EPA. We anticipate this more modern fleet will result in reduced maintenance expenses, improved operating efficiencies and enhanced driver recruitment and retention. At September 30, 2013, the Company owned and operated a fleet of 435 trucks and 533 trailers plus 3 additional trucks being prepared for service and 4 additional trucks that were being prepared for sale.

The Company’s transportation segment acquired certain assets of Pipeline Transportation, Inc. on November 7, 2013. Pipeline’s operations have been conducted in the Florida and Alabama markets also served by Florida Rock and Tank Lines, Inc. For the twelve month period ending June 30, 2013, Pipeline had gross revenues of just over $16,500,000.

Mining Royalty Land. The mining royalty land segment owns and seeks to acquire land with construction aggregates deposits, a substantial portion of which is leased to Vulcan Materials Company under long-term mining royalty agreements, whereby the Company is paid a percentage of the revenues generated or annual minimums. The segment also owns mining related land held for future appreciation or development.

Developed Property Rentals. The developed property rentals segment acquires, constructs, leases and manages land and commercial buildings in the Baltimore/Northern Virginia/Washington and Jacksonville, Florida areas.

A significant part of our strategy has been to develop high quality, flexible warehouse/office space. Average occupancy for the fiscal year for buildings in service more than 12 months was 88.4%. At September 30, 2013, 89.6% of the total warehouse/office portfolio of approximately 3.3 million square feet was occupied.

Price, location, rental space availability, flexibility of design, and property management services are the major factors that affect competition in the flexible warehouse/office rental market. The Company experiences considerable competition in all of its markets.

Tenants of flexible warehouse/office properties are not concentrated in any one particular industry.

Relationship with Vulcan Materials Company. The Company was spun off from Florida Rock Industries, Inc. (“FRI”) in 1986. FRI merged with Vulcan Materials Company (“Vulcan”) in November 2007. Nearly all of our mining properties are leased to Vulcan under long-term mining leases entered into in the 1980s. We haul diesel fuel and cement for Vulcan. We also are a party to a joint venture agreement with Vulcan to develop approximately 4,300 acres of property located near Brooksville, Florida.

Vulcan accounted for approximately 18.6% of our real estate revenues and 6.1% of our transportation revenues for fiscal 2013. On a consolidated basis, Vulcan accounted for 8.6% of our fiscal 2013 revenues.

Segment Information. The Company operates in three reportable segments: transportation, mining royalty land and developed property rentals. Industry segment information is presented in Note 10 to the consolidated financial statements included in the accompanying 2013 Annual Report to Shareholders and is incorporated herein by reference.

Environmental Matters. Environmental regulations have increased the costs of our transportation and real estate businesses. Revised EPA regulations decrease the amount of permitted air emissions that can be released by tractor engines and affect tractors produced after the effective date of the regulations. Compliance with these regulations has increased the cost of our new tractors, increased repair expense, and lowered fuel mileage. This will increase our capital expenditures and our operating expenses. The Company has incurred costs to investigate and remediate environmental contamination on its real estate. The Company's mining leases contain a provision making the lessee responsible for reclamation of mining sites at least to the extent required by law.

Seasonality. The Company’s business is subject to limited seasonality due to the cyclical nature of our customers’ businesses, with revenues generally declining slightly during winter months.

Employees. The Company employed 860 people in its transportation segment, 15 people in its real estate group and 11 people in its corporate offices at September 30, 2013.

Company Website. The Company’s website may be accessed at www.patriottrans.com. All of our filings with the Securities and Exchange Commission can be accessed through our website promptly after filing. This includes annual reports on Form 10-K, proxy statements, quarterly reports on Form 10-Q, current reports filed or furnished on Form 8-K and all related amendments.

EXECUTIVE OFFICERS OF THE REGISTRANT

Name | Age |  | Office | Position Since
John D. Baker II | 65 |  | Executive Chairman | Oct. 1, 2010
Thompson S. Baker II | 54 |  | President & Chief | Oct. 1, 2010
|  |  | Executive Officer |
David H. | 62 |  | Vice President of the | Feb. 28, 1994
deVilliers, Jr. |  |  | Company and President |
|  |  | of the Company's Real |
|  |  | Estate Group |

John D. Milton, Jr. | 68 |  | Exec. Vice President, | Jun. 16, 2008
|  |  | Treasurer, Secretary |
|  |  | and Chief Financial |
|  |  | Officer |
John D. Klopfenstein | 50 |  | Controller and Chief | Feb. 16, 2005
|  |  | Accounting Officer |
Robert E. Sandlin | 52 |  | Vice President of the | Mar. 1, 2003
|  |  | Company and President |
|  |  | of Florida Rock & |
|  |  | Tank Lines, Inc. |

All of the above officers have been employed in their respective positions for the past five years except as follows: John D. Baker II served as President and Chief Executive Officer of the Company from February 2008 to October 2010 and as President and Chief Executive Officer of Florida Rock Industries, Inc. from 1996 to November 2007; and Thompson S. Baker II served as the President of the Florida Rock Division of Vulcan Materials Company ("Vulcan") from November 2007 to September 2010 and as President of the Aggregates Group of Florida Rock Industries, Inc. from August 1991 to November 2007.

John D. Baker II, who is the brother of Chairman Emeritus Edward L. Baker, and Thompson S. Baker II, who is the son of Edward L. Baker, are directors of the Company.

All executive officers of the Company are elected by the Board of Directors annually and serve until their resignation or removal.

Item 1A. RISK FACTORS.

Our future results may be affected by a number of factors over which we have little or no control. The following issues, uncertainties, and risks, among others, should be considered in evaluating our business and outlook. Also, note that additional risks not currently identified or known to us could also negatively impact our business or financial results.

We face significant uncertainty regarding the continued demand for our transportation services during the current economic climate.

The transportation segment produces approximately 80% of our gross revenues and 46% of our operating profit. The current economic climate could adversely affect the demand for our transportation services. These adverse economic conditions may result in reductions in our revenue, increased price competition and increased operating costs, which could have an adverse effect on our business, results of operation and financial condition.

We would be adversely affected by a decline in demand for hauling ethanol.

In addition to other products, our tank lines subsidiary hauls

ethanol which is blended with other petroleum products. The ethanol industry is highly dependent upon federal and state legislation and changes in such legislation could adversely affect the demand for ethanol products and the resulting demand for our transportation services. In addition, we would be adversely affected by the future construction of pipelines to transport ethanol, which also would reduce demand for our transportation services.

We would be adversely affected by a decline in gasoline and diesel fuel consumption.

In addition to other products, our tank lines subsidiary hauls gasoline and diesel. Our results would be adversely affected by a decreased demand for gasoline and diesel fuel. The market demand for these products could be affected by increase in oil prices, government regulation, improved vehicle fuel efficiency, consumer preferences toward alternative fueled vehicles and technological advances.

Our operating results may be adversely impacted by volatility in fuel costs or by fuel shortages.

The crude oil and petroleum products markets are extremely volatile. Fuel prices are affected by a number of economic and political factors, including general political conditions, acts of war or terrorism, political instability in oil producing regions and capacity at United States oil refineries. Our operating results are impacted by our ability to recover fuel surcharges from customers. In light of the volatility of fuel prices, it may be difficult for us to recover fuel surcharges from customers at levels that will allow us to maintain current levels of profitability. In addition, increased fuel prices reduce consumer demand for the petroleum products hauled by our tank lines subsidiary, adversely impacting revenues. Our operations may also be adversely affected by any limit on the availability of fuel.

Our business may be adversely affected by seasonal factors and harsh weather conditions.

Our business is subject to seasonal trends common in the refined petroleum products delivery industry. We typically face increased demand for fuel delivery services in Florida during the spring months. Our real estate group is adversely affected by reduced construction activity during periods of inclement weather. These factors can cause our operating results to fluctuate from quarter to quarter. An occurrence of unusually harsh or long-lasting inclement weather such as hurricanes, tornadoes and heavy snowfalls could have an adverse effect on our operations and profitability.

Our revenues depend in part on construction sector activity levels, which tend to be cyclical.

Our real estate group receives part of its revenues from royalties on construction aggregates mined on our properties. Thus, our results depend in part on residential, commercial and infrastructure construction activity and spending levels. The

construction industry in our markets tends to be cyclical. Construction activity and spending levels vary across our markets and are influenced by interest rates, inflation, consumer spending habits, demographic shifts, environmental laws and regulations, employment levels and the availability of funds for public infrastructure projects. Economic downturns may lead to recessions in the construction industry, either in individual markets or nationally.

We face difficulty in recruiting and retaining qualified drivers.

In some years the transportation industry has had difficulty attracting and retaining qualified drivers (including independent contractors), and competition for drivers sometimes can be intense. To compete for drivers, we may be forced to increase driver compensation. We cannot be certain that we could pass along the increased compensation costs to our customers. If we are unable to continue to attract drivers and contract with independent contractors, we could be required to suffer downtime and lost revenue miles.

New tractors are more expensive.

New tractors are more expensive, primarily due to higher commodity prices, better pricing power among equipment manufacturers, and government regulations applicable to newly manufactured tractors and diesel engines. Revised EPA regulations decrease the amount of permitted air emissions that can be released by tractor engines and affect tractors produced after the effective date of the regulations. Compliance with these regulations increased the cost of our new tractors, increased repair expense and lowered fuel mileage. This will increase our capital expenses and our operating expenses. These adverse effects combined with the uncertainty as to the reliability of the vehicles equipped with the newly designed diesel engines and the residual values that will be realized from the disposition of these vehicles could increase our costs or otherwise adversely affect our business or operations.

We have significant ongoing capital requirements.

Our transportation business requires substantial ongoing capital investment, particularly for tractors, trailers, terminals and technology. For the past few years, we have depended on cash from operations and our credit facilities to fund our revenue equipment. We expect to continue to pay for projected capital expenditures with cash flows from operations and borrowings under our line of credit. If we are unable to generate sufficient cash from operations and obtain financing on favorable terms in the future, we may have to limit our growth, enter into less favorable financing arrangements, or operate our revenue equipment for longer periods, any of which could have a material adverse effect on our profitability.

The loss of one of our major transportation customers could have a materially adverse effect on our business.

A significant portion of our transportation revenue is generated from our major customers. For 2013, our top 10 customers, based on

revenue, accounted for approximately 54.2% of our transportation segment’s revenue and one customer accounted for 20.0% of the segment’s revenue. A reduction in or termination of our services by one or more of our major customers could have a materially adverse effect on our business and operating results.

The trucking industry is extremely competitive and fragmented.

The trucking industry is extremely competitive and fragmented. No single truckload carrier has a significant market share. We compete with many other truckload carriers of varying sizes, customers’ private fleets, and, to a lesser extent, with railroads which may limit our growth opportunities and reduce profitability. Some of our competitors periodically reduce their freight rates to gain business, especially during times of reduced growth rates in the economy, which may limit our ability to maintain or increase freight rates or maintain our profit margins. Many customers reduce the number of carriers they use by selecting so-called “core carriers” as approved transportation service providers, and in some instances we may not be selected. Historically, competition has created downward pressure on the truckload industry’s pricing structure.

Our operations are subject to various environmental laws and regulations, the violation of which could result in substantial fines or penalties.

We are subject to various environmental laws and regulations dealing with the handling of hazardous materials, fuel storage tanks, air emissions from our vehicles and facilities, and engine idling. Our operations involve the risks of fuel spillage or seepage, environmental damage, and hazardous waste disposal, among others. We also maintain bulk fuel storage and fuel islands at several of our facilities. Although we have instituted programs to monitor and control environmental risks and promote compliance with applicable environmental laws and regulations, the failure to comply with applicable laws or regulations could subject us to liabilities, including substantial fines or penalties or civil and criminal liability, that could have a materially adverse effect on our business and operating results.

Environmental liability for contamination may include the following, without limitation: investigation and feasibility study costs, remediation costs, litigation costs, oversight costs, monitoring costs, institutional control costs, penalties from state and federal agencies, and third-party claims. These costs could be substantial and in extreme cases could exceed the value of the contaminated property. Moreover, operations on-site may be required to be suspended until certain environmental contamination is remediated and/or permits are received and environmental laws can impose permanent restrictions on the manner in which a property may be used depending on the extent and nature of the contamination. This may result in a default of the terms of the lease entered into with our tenants. Environmental laws also may create liens on contaminated sites in favor of the government for damages and costs it incurs to address such contamination. In addition, the presence

of hazardous substances at, on, under or from a property may adversely affect our ability to sell the property or borrow using the property as collateral, thus harming our financial condition.

The presence of contaminated material at our RiverFront on the Anacostia development site may subject us to substantial environmental liability and costs.

With respect to our joint venture with MRP known as RiverFront on the Anacostia in Washington, D.C., preliminary environmental testing completed in the summer of 2012 on the portion of the site that will contain the first phase of the development indicated the presence of contaminated material that will have to be specially handled in the event of excavation in conjunction with construction. We believe these contaminants are a result of normal operations of our previous tenant over the long-term due to documented releases from an underground storage tank which was located within the first phase along with other activities by the tenant on the property. While we believe that the prior tenant is responsible for these costs and is required to indemnify us against any environmental liabilities arising from its activities on the property, we could nevertheless be subject to strict liability under environmental laws because we own the property. We may face this liability regardless of our lack of knowledge of the contamination or whether or not we caused the contamination. There is also a risk that the prior tenant may not satisfy their environmental compliance and indemnification obligations under the lease. Any of these events could substantially increase our cost of operations.

Notwithstanding the prior tenant’s obligations to us under the lease, with respect to MRP, we are solely responsible to appropriately handle the removal of any known hazardous substances on Phase 1 of the property up to a proposed cap of $1.871 million. MRP has agreed to share such costs above that cap. Accordingly, we recorded an expense in the fourth quarter of fiscal 2012 of $1,771,000 for this environmental remediation liability which is the lower end of the range of estimates. The actual expense may be materially higher or lower depending upon the determined responsibility of the prior tenant, our ability to collect from such prior tenant and actual costs incurred. In the event these costs are materially higher than forecasted, it could have a material adverse effect on our financial condition and results of operations.

Further testing during the fourth quarter of fiscal 2013 revealed the existence of contamination on the other three phases and we are requesting the prior tenant take financial responsibility for removal of this contamination as well. The Company has no obligation to remediate this contamination on Phases II, III and IV until such time as it commences construction there.

Uninsured losses could significantly reduce our earnings.

We self-insure for a portion of our claims exposure resulting from workers’ compensation, auto liability, general liability, cargo and

property damage claims, as well as employees’ health insurance. We also are responsible for our legal expenses relating to such claims. We maintain insurance above the amounts for which we self-insure with licensed insurance carriers. Although we believe the aggregate insurance limits should be sufficient to cover reasonably expected claims, it is possible that one or more claims could exceed our aggregate coverage limits. Also, there are some types of losses such as from hurricanes, terrorism, wars, or earthquakes where insurance is limited and/or not economically justifiable. If an uninsured loss occurs, we could lose both the invested capital and anticipated revenues. We accrue currently for estimated incurred losses and expenses. We periodically evaluate and adjust our claims accrued liability to reflect our experience. However, ultimate results may differ from our estimates, which could result in losses over our accrued amounts.

Rising insurance costs could significantly reduce our earnings. Insurance carriers sometimes raise premiums for many businesses, including trucking companies. As a result, our insurance and claims expense could increase, or we could raise our self-insured retention when our policies are renewed. If we are unable to pass along this cost increase to customers, our earnings may be significantly reduced.

Compliance with recent or future transportation regulations may significantly reduce earnings.

Our transportation operations are regulated and licensed by various U.S. agencies. While the costs of compliance with existing regulations generally is reflected in our prior results, recent regulations (such as the tractor air emissions regulations) and future laws and regulations may be more stringent and require changes in our operating practices, influence the demand for transportation services, or require us to incur significant additional costs. Higher costs incurred by us could adversely affect our results of operations.

We may be unable to renew leases or relet space as leases expire.

When a lease expires, a tenant may elect not to renew it. We may not be able to relet the property on similar terms. The terms of renewal or re-lease (including the cost of required renovations and/or concessions to tenants) may be less favorable than the prior lease. If we are unable to relet all or a substantial portion of our properties, or if the rental rates upon such reletting are significantly lower than expected rates, our cash generated before debt repayments and capital expenditures may be adversely affected. As of September 30, 2013, leases at our properties representing approximately 12%, 17% and 14% of the total square footage of buildings completed prior to September 2013 were scheduled to expire in fiscal year 2014, 2015 and 2016, respectively.

We may be unable to lease currently vacant space.

Vacant space totals 10% in our business parks and only a small portion of that has leases signed for future occupancy. If we are unable to obtain leases sufficient to cover carrying costs then our

cash flows may continue to be adversely affected.

The bankruptcy or insolvency of significant tenants with long-term leases may adversely affect income produced by our properties.

We have 13 buildings in our business parks that are single-tenant occupied representing 44% of developed property rentals under long-term leases. We have seven other tenants with leases in excess of five years. Should tenants default on their obligations, our cash flow would be adversely affected and we may not be able to find another tenant to occupy the space under similar terms or have to make expenditures to retrofit and/or divide the space. In addition we may have to incur a non-cash expense for a significant amount of deferred rent revenue generated from the accounting requirement to straight-line rental revenues. The bankruptcy or insolvency of a major tenant may also adversely affect the income produced by a property. If any of our tenants becomes a debtor in a case under the U.S. Bankruptcy Code, we cannot evict that tenant solely because of its bankruptcy. The bankruptcy court may authorize the tenant to reject and terminate its lease with us. Our claim against such a tenant for unpaid future rent would be subject to a statutory limitation that might be substantially less than the remaining rent actually owed to us under the tenant’s lease. Any shortfall in rent payments could adversely affect our cash flow.

A decline in the economic conditions in Baltimore-Washington-Northern Virginia area could adversely affect our business.

Nearly all of our office/warehouse properties are located in the Baltimore-Washington-Northern Virginia area. As a result of our geographic concentration, we depend upon the local conditions in these markets, including local real estate conditions. We are, therefore, subject to increased exposure (positive or negative) to economic and other competitive factors specific to markets in confined geographic areas. Our operations may also be affected if too many competing properties are built in these markets. An economic downturn in these markets could adversely affect our operation. We cannot assure you that these markets will continue to grow or will continue to provide favorable demand for our office/warehouse product.

Our inability to obtain necessary approvals for property development could adversely affect our profitability.

We may be unable to obtain, or incur delays in obtaining, necessary zoning, land-use, building, occupancy and other required governmental permits and authorizations, which could result in increased costs or abandonment of these projects. Before we can develop a property, we must obtain a variety of approvals from local and state governments with respect to such matters as zoning, density, parking, subdivision, site planning and environmental issues. Legislation could impose moratoriums on new real estate development and/or land-use conversions from mining to development. These factors may reduce our profit or growth and may limit the value of these properties.

Real estate investments are not as liquid as other types of assets.

The illiquid nature of real estate investments may limit our ability to react promptly to changes in economic or other conditions. In addition, significant expenditures associated with real estate investments, such as mortgage payments, real estate taxes and maintenance costs, are generally not reduced when circumstances cause a reduction in income from the investments. Thus, the illiquid nature of our real estate investments could adversely affect our profitability under certain economic conditions.

Our debt service obligations may have adverse consequences on our business operations.

We use debt to finance our operations, including acquisitions of properties. Our use of debt may have adverse consequences, including the following:

| · | Our cash flows from operations may not be sufficient to meet required payments of principal and interest.

| · | We may be forced to dispose of one or more of our properties, possibly on disadvantageous terms, to make payments on our debt.

| · | We may default on our debt obligations, and the lenders may foreclose on our properties that collateralize those loans.

| · | A foreclosure on one of our properties could create taxable income without any accompanying cash proceeds to pay the tax.

| · | A default under a mortgage loan that has cross default provisions may cause us to automatically default on another loan.

| · | We may not be able to refinance or extend our existing debt.

| · | The terms of any refinancing or extension may not be as favorable as the terms of our existing debt.

| · | We may not be able to issue debt on unencumbered properties under reasonable terms to finance growth of our portfolio of properties.

| · | We may be subject to a significant increase in the variable interest rates on our unsecured line of credit or unsecured term loan, which could adversely impact our operations.

| · | Our debt agreements have yield maintenance requirements that result in a penalty if we prepay loans.

As of September 30, 2013, we had outstanding non-recourse mortgage indebtedness of $49,904,000, secured by developed real estate properties having a carrying value of $58,724,000.

Our uncollateralized revolving credit agreement restricts our ability to engage in some business activities.

Our uncollateralized revolving credit agreement contains customary negative covenants and other financial and operating covenants

that, among other things:

| · | restricts our ability to incur certain additional indebtedness;

| · | restricts our ability to make certain investments;

| · | restricts our ability to merge with another company;

| · | restricts our ability to pay dividends;

| · | requires us to maintain financial coverage ratios; and

| · | requires us to not encumber certain assets except as approved by the lenders.

These restrictions could cause us to default on our unsecured line of credit or negatively affect our operations.

Our real estate segment faces competition from numerous sources.

As a developer of flexible warehouse/office space, we compete with numerous developers, owners and operators of real estate, many of which own properties similar to ours in the same submarkets in which our properties are located. If our competitors offer space at rental rates below current market rates, or below the rental rates we currently charge our tenants, we may lose potential tenants and we may be pressured to reduce our rental rates below those we currently charge in order to retain tenants when our tenants’ leases expire. As a result, our financial condition, results of operations, cash flow and ability to satisfy our debt service obligations could be materially adversely affected.

Construction costs may be higher than anticipated.

Our long-term business plan includes a number of construction projects. The construction costs of these projects may exceed original estimates and possibly make the completion of a property uneconomical. Building material commodity shortages, construction delays/stoppages and/or rapidly escalating construction costs may out-pace market rents, adversely affecting profits. The market environment and existing lease commitments may not allow us to raise rents to cover these higher costs.

Certain shareholders have effective control of nearly a majority of our common stock and likely will control the outcome of any shareholder vote.

As of November 10, 2013, three of our directors, Edward L. Baker, John D. Baker II and Thompson S. Baker II, beneficially own approximately 22.6% of the outstanding shares of our common stock and certain of their family members beneficially own an additional 10.2%. As a result, these individuals effectively may have the ability to direct the election of all members of our Board of Directors and to exercise a controlling influence over our business and affairs, including any determinations with respect to mergers or other business combinations involving us, our acquisition or disposition of assets, our borrowing of monies, our issuance of any additional securities, our repurchase of common stock and our payment of dividends.

Our charter and bylaws contain provisions that may hinder a takeover or negatively affect our stock price.

Our articles of incorporation and bylaws contain several provisions that may make it more difficult and expensive for a third party to acquire control of us without the approval of our board of directors. Our articles of incorporation and bylaws contain provisions dividing our board of directors into four classes of directors serving four-year terms and providing that directors may only be removed for cause. Our articles of incorporation also provide that our shareholders can take action only at a duly called annual or special meeting of shareholders and require a supermajority vote to approve certain matters. In addition, our board of directors is authorized to issue additional shares of common stock or preferred stock and to determine the rights and preferences of any shares of preferred stock to be issued.

Our cash and cash equivalents at times exceed FDIC insurance limits exposing us to possible losses.

In the current financial climate, the Company is monitoring the financial stability of its lending banks as well as its depository institutions. At present the Company does not foresee the necessity for changing any of these relationships but will continue to monitor conditions particularly with respect to the depository for its liquid funds. The Company places its cash and cash equivalents with high credit quality institutions. At times such amounts may exceed FDIC insurance limits.

Item 1B. UNRESOLVED STAFF COMMENTS.

None.

Item 2. PROPERTIES.

Transportation Segment Properties. The Company has 21 sites for its trucking terminals in Alabama, Florida, Georgia, North Carolina, South Carolina and Tennessee. The Company owns 13 of these sites and leases 8.

Mining Royalty Land Segment Construction Aggregates Properties. The following table summarizes the Company's construction aggregates locations and estimated reserves at September 30, 2013 a substantial portion of which are leased to Vulcan.

|  | Tons of |
| Tons Sold | Estimated |
| in Year | Reserves |
| Ended | at |
| 9/30/13 | 9/30/13 | Approximate
| (000's) | (000's) | Acres Owned
The Company owns seven |  |  |
locations currently being |  |  |
mined in Grandin, Keuka, |  |  |

Newberry, Florida; Columbus, |  |  |
Macon, and Tyrone, Georgia; |  |  |
and Manassas, Virginia. | 4,459 | 336,855 | 10,423
The Company owns six locations |  |  |
not currently being mined in |  |  |
Ft. Myers, Airgrove/ |  |  |
Lake County (temporary), |  |  |
Marion County, Astatula/Lake |  |  |
County, Lake Louisa, Florida; |  |  |
and Forest Park, Georgia. | 25 | 96,532 | 4,771

These figures exclude Brooksville, Florida as the property was transferred October 4, 2006 to a joint venture with Vulcan for development. Brooksville tons sold in fiscal 2013 were 349,000 and estimated reserves were 5,400,000 at September 30, 2013.

The Ft. Myers residential property in Lee County, Florida is part of a 1,993 acre site under a long-term mining lease to Vulcan. In June, 2010 the Company entered into a letter agreement with Vulcan Materials Company that required modifications to the existing mining lease on our property, such that the mining will be accelerated and the mining plan will be revised to accommodate future construction of up to 105 residential dwelling units around the mined lakes. In return the Company agreed to grant Lee County a right of way for a road and to place a conservation easement on part of the property.

Mining Royalty Land Segment Brooksville Joint Venture. On October 4, 2006, a subsidiary of the Company (FRP) entered into a Joint Venture Agreement with Vulcan Materials Company (formerly Florida Rock Industries, Inc.) to form Brooksville Quarry, LLC, a real estate joint venture to develop approximately 4,300 acres of land near Brooksville, Florida. In April 2011, the Florida Department of Community Affairs issued its Final Order approving the development of the Project, and zoning for the Project was obtained in August 2012.

Mining Royalty Land Segment Other Properties. The segment owns 1,923 acres of investment properties in Gulf Hammock, Brooksville, Palatka, and Polk County, Florida and Yatesville and Henderson, Georgia.

Developed Properties Rentals Segment. At September 30, 2013 certain developed real estate properties having a carrying value of $58,724,000 were pledged on long-term non-recourse notes with an outstanding principal balance totaling $49,904,000. At September 30, 2013, the Company owned 400 acres in 15 developed parcels of land all but one of which are in the Mid-Atlantic region of the United States as follows:

1) Hillside Business Park in Anne Arundel County, Maryland consists of 49 usable acres. Four warehouse/office buildings and one suburban office building totaling 567,473 square feet exist on the

property and are 99% occupied.

2) Lakeside Business Park in Harford County, Maryland consists of 84 usable acres. Nine warehouse/office buildings totaling 893,722 square feet exist on 64 of these acres and are 91.3% occupied. The remaining 20 acres are available for future development and have the potential to offer an additional 266,530 square feet of comparable product.

3) 6920 Tudsbury Road in Baltimore County, Maryland contains 5.3 acres with 86,100 square feet of warehouse/office space that is 100% occupied by a single tenant.

4) 8620 Dorsey Run Road in Howard County, Maryland contains 5.8 acres with 85,100 square feet of warehouse/office space that is 100% occupied.

5) Rossville Business Center in Baltimore County, Maryland contains approximately 10 acres with 190,517 square feet of warehouse/office space and is 100% occupied.

6) 34 Loveton Circle in suburban Baltimore County, Maryland contains 8.5 acres with 33,708 square feet of office space, which is 81% occupied including 24% of the space occupied by the Company.

7) Oregon Business Center in Anne Arundel County, Maryland contains approximately 17 acres with 195,615 square feet of warehouse/office space, which is 89% occupied.

8) Arundel Business Center in Howard County, Maryland contains approximately 11 acres with 162,796 square feet of warehouse/office space. A new lease commenced October 2013 for 13,645 square feet increasing occupancy to 100%.

9) 100-400 Interchange Boulevard in New Castle County, Delaware contains approximately 17 acres with 303,006 square feet of warehouse/office space, which is 49% occupied. Chrysler and General Motors plant closings in 2008 continued to keep a reduced demand for space in this market. The remaining 8.8 acres are available for excess trailer storage or an additional 93,600 square feet of comparable product.

10) 1187 Azalea Garden Road in Norfolk, Virginia contains approximately 12 acres with 188,093 square feet of warehouse/office space, which is 100% occupied.

11) Windlass Run Business Park in Baltimore County, Maryland contains 69,474 square feet of warehouse/office space on 4.7 acres that is currently 50% occupied. An additional 26 acres (excluding wetlands) of fully developed land is available with the potential to offer 386,626 square feet of warehouse, office, flex and retail buildings. An agreement to lease 55,729 square feet is scheduled to commence January 2014 and will increase occupancy to 100%.

12) 155 E. 21st Street in Duval County, Florida contains approximately 6 acres with 68,757 square feet of office space which is 100% leased to Vulcan.

13) Hollander 95 Business Park in Baltimore City, Maryland was purchased in October of 2010 and contains 82,800 square feet of warehouse/office space on 3.8 acres which is 100% leased. An additional 38 acres of partially developed land is available with the potential to offer 425,750 square feet of warehouse, office, hotel and flex buildings.

14) Patriot Business Park in Prince William County, Maryland contains 117,600 square feet of office space on 10 acres which is 100% occupied. The Company entered into a build to suit lease in May 2013 for a 125,500 square foot building situated on 8 acres which is currently under construction and scheduled for completion and occupancy during the first quarter of calendar 2014. The remaining 37 acres have the potential to offer an additional 390,000 square feet of comparable product.

15) Transit Business Park in Baltimore, Maryland contains five buildings totaling 232,318 square feet on 14.5 acres and is 88% occupied.

Developed Property Rentals Segment Future Planned Developments. At September 30, 2013 the Company owned the following future development parcels:

1) Windlass Run Residential (previously Bird River) phase 2, located in southeastern Baltimore County, Maryland, is a 74 acre tract of land adjacent to our Windlass Run Business Park. The property was rezoned in September 2007 to allow for additional density. In July 2008, the Company entered into an agreement to sell the entire 121 acres at a purchase price of $25,075,000 and closing was scheduled to occur in the first quarter of calendar 2012. The contract purchaser had placed non-refundable deposits of $1,000,000 under this contract in escrow. In October 2011 the contract purchaser terminated its agreement to purchase the property and released the $1,000,000 escrow deposit to the company’s subsidiary, FRP Bird River, LLC. along with all permits, engineering work, plans and other development work product with regards to the property. The Company continued the entitlement process for this parcel of land for residential development as a planned unit development (PUD) and was successful in receiving approval for up to 412 dwelling units. In September 2012, the Company received a non-binding letter of intent to sell the property for $18.8 million in two phases. The letter of intent to sell the property was converted into 2 executed contracts that expired during the due diligence period. The Company executed two contracts on April 17, 2013 with another buyer for the sale of phase 1 of the property in the quarter ending September 30, 2013 for $8.0 million and the balance for $11.0 million approximately 18 months later. The sale of phase 1 was completed in August of 2013 and resulted in a gain of $4,928,000.

2) Anacostia River. The Company owns a 5.8 acre parcel of undeveloped real estate in Washington D.C. that fronts the Anacostia River and is adjacent to the Washington Nationals Baseball Park. The parcel was leased to a subsidiary of Vulcan Materials Company from 1986 through August 2011. In September 2011 Vulcan commenced a long term lease for a Company owned 2.1 acre tract which is nearby on the same bank of the Anacostia River. The approved planned unit development for the 5.8 acre parcel permits the Company to develop a four building, mixed use project, containing approximately 545,800 square feet of office and retail space and approximately 569,600 square feet of additional space for residential and hotel uses. The approved development would include numerous publicly accessible open spaces and a waterfront esplanade along the Anacostia River.

In March 30, 2012 the Company entered into a Contribution Agreement with MRP SE Waterfront Residential, LLC. (“MRP”) to form a joint venture to develop the first phase only of the four phase master development known as RiverFront on the Anacostia in Washington, D.C. The purpose of the Joint Venture is to develop, own, lease and possibly sell an approximately 300,000 square foot residential apartment building (including approximately 18,000 square feet of retail) on a portion of the roughly 5.82 acre site. The joint venture, Riverfront Investment Partners I, LLC (“Riverfront I”) was formed in June 2013 as contemplated. The Company’s cost of the property to be contributed of $5,839,000 was transferred from Property, Plant and Equipment to Investment in joint ventures and is accounted for under the equity method of accounting. MRP will contribute capital of $4,000,000 to the joint venture including development costs paid prior to formation of the joint venture. MRP will raise any additional equity capital and obtain a nonrecourse loan for the balance of the estimated construction and lease up costs. At this point the Company anticipates commencement of construction of Phase I in mid 2014 with lease up scheduled between late 2015 and all of 2016. The Company’s equity interest in the joint venture will be determined based on leverage of the entity, additional cash contributions by the Company, and negotiations with potential third partners.

3) Leister property in Hampstead, Carroll County, Maryland is a 117 acre parcel located adjacent to State Route 30 bypass. The parcel is currently zoned for industrial use. Alternative uses are being investigated in order to maximize this assets’ profitability and expedite it’s disposition.

Item 3. LEGAL PROCEEDINGS.

Note 12 to the Consolidated Financial Statements included in the accompanying 2013 Annual Report to Shareholders is incorporated herein by reference.

Item 4. MINE SAFETY DISCLOSURES.

None.

PART II

Item 5. MARKET FOR REGISTRANT'S COMMON EQUITY, RELATED STOCKHOLDER MATTERS AND ISSUER PURCHASES OF EQUITY SECURITIES.

There were approximately 497 holders of record of Patriot Transportation Holding, Inc. common stock, $.10 par value, as of September 30, 2013. The Company's common stock is traded on the Nasdaq Stock Market (Symbol PATR). Information concerning stock prices is included under the caption "Quarterly Results" on page 6 of the Company's 2013 Annual Report to Shareholders, and such information is incorporated herein by reference. The Company has not paid a cash dividend in the past and it is the present policy of the Board of Directors not to pay cash dividends. Information concerning restrictions on the payment of cash dividends is included in Note 3 to the consolidated financial statements included in the accompanying 2013 Annual Report to Shareholders and such information is incorporated herein by reference. Information regarding securities authorized for issuance under equity compensation plans is included in Item 12 of Part III of this Annual Report on Form 10-K and such information is incorporated herein by reference.

Purchases of Equity Securities by the Issuer and Affiliated Purchasers

|  |  |  |  |  | (c) |  |
|  |  |  |  |  | Total |  |
|  |  |  |  |  | Number of |  |
|  |  |  |  |  | Shares |  | (d)
|  |  |  |  |  | Purchased |  | Approximate
|  | (a) |  |  |  | As Part of |  | Dollar Value of
|  | Total |  | (b) |  | Publicly |  | Shares that May
|  | Number of |  | Average |  | Announced |  | Yet Be Purchased
|  | Shares |  | Price Paid |  | Plans or |  | Under the Plans
Period |  | Purchased |  | per Share |  | Programs |  | or Programs (1)
| July 1 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Through |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| July 31 |  |  |  | — |  |  | $ | — |  |  |  | — |  |  | $ | 3,682,000 |
| August 1 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Through |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| August 31 |  |  |  | — |  |  | $ | — |  |  |  | — |  |  | $ | 3,682,000 |
| September 1 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Through |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| September 30 |  |  |  | — |  |  | $ | — |  |  |  | — |  |  | $ | 3,682,000 |
| Total |  |  |  | — |  |  | $ | — |  |  |  | — |  |  |  |  |

(1) In December, 2003, the Board of Directors authorized management to expend up to $6,000,000 to repurchase shares of the Company’s common stock from time to time as opportunities arise. On February

19, 2008, the Board of Directors authorized management to expend up to an additional $5,000,000 to repurchase shares of the Company’s common stock from time to time as opportunities arise.

Item 6. SELECTED FINANCIAL DATA.

Information required in response to this Item 6 is included under the caption "Five Year Summary" on page 6 of the Company's 2013 Annual Report to Shareholders and such information is incorporated herein by reference.

Item 7. MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATION.

Information required in response to Item 7 is included under the caption "Management’s Discussion and Analysis of Financial Condition and Results of Operation" on pages 7 through 13 of the Company’s 2013 Annual Report to Shareholders and such information is incorporated herein by reference.

Item 7.A QUANTITATIVE AND QUALITATIVE DISCLOSURES ABOUT MARKET RISK.

The Company is exposed to market risk from changes in interest rates. For its cash and cash equivalents, a change in interest rates affects the amount of interest income that can be earned. The Company prepared a sensitivity analysis of its cash and cash equivalents to determine the impact of hypothetical changes in interest rates on the Company's results of operations and cash flows. The interest-rate analysis assumed a 50 basis point adverse change in interest rates on all cash and cash equivalents. However, the interest-rate analysis did not consider the effects of the reduced level of economic activity that could exist in such an environment. Based on this analysis, management has concluded that a 50 basis point adverse move in interest rates on the Company's cash and cash equivalents would have an immaterial impact on the Company's results of operations and cash flows.

For its debt instruments with variable interest rates, changes in interest rates affect the amount of interest expense incurred. The Company did not have any variable rate debt outstanding at September 30, 2013. The following table provides information about the Company’s long-term debt (dollars in thousands):

|  |  |  |  |  |  |  |  |  |  | There |  |  |  | Fair
Liabilities: | 2014 |  | 2015 |  | 2016 |  | 2017 |  | 2018 |  | after |  | Total |  | Value
Scheduled |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
maturities of |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
long-term debt: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Fixed Rate | $ | 4,311 |  |  | $ | 4,533 |  |  | $ | 4,616 |  |  | $ | 4,887 |  |  | $ | 4,674 |  |  | $ | 26,883 |  |  | $ | 49,904 |  |  | $ | 53,252 |
Average |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
interest rate |  | 6.3% |  |  |  | 6.2% |  |  |  | 6.2% |  |  |  | 6.1% |  |  |  | 6.1% |  |  |  | 6.0% |  |  |  |  |  |  |  |  |

Item 8. FINANCIAL STATEMENTS AND SUPPLEMENTARY DATA.

Information required in response to this Item 8 is included under the caption "Quarterly Results" on page 6 and on pages 14 through 26 of the Company's 2013 Annual Report to Shareholders. Such information is incorporated herein by reference.

Item 9. CHANGES IN AND DISAGREEMENTS WITH ACCOUNTANTS ON ACCOUNTING AND FINANCIAL DISCLOSURE.

None.

Item 9A. CONTROLS AND PROCEDURES.

CONCLUSION REGARDING THE EFFECTIVENESS OF DISCLOSURE CONTROLS AND PROCEDURES

Under the supervision and with the participation of our management, including our principal executive officer, principal financial officer and chief accounting officer, we conducted an evaluation of our disclosure controls and procedures, as such terms is defined under Rule 13a-15(e) promulgated under the Securities Exchange Act of 1934, as amended (the “Exchange Act”). Based on this evaluation, our principal executive officer, our principal financial officer and our chief accounting officer concluded that our disclosure controls and procedures were effective as of the end of the period covered by this Annual Report.

MANAGEMENT’S REPORT ON INTERNAL CONTROL OVER FINANCIAL REPORTING

Our management is responsible for establishing and maintaining adequate internal control over financial reporting, as such term is defined in Exchange Act Rule 13a-15(f). Under the supervision and with the participation of our management, including our principal executive officer and principal financial officer, we conducted an evaluation of the effectiveness of our internal control over financial reporting based on the framework in the 1992 Internal Control-Integrated Framework issued by the Committee of Sponsoring Organizations of the Treadway Commission. Based on our evaluation under the framework in the 1992 Internal Control-Integrated Framework, our management concluded that our internal control over financial reporting was effective as of September 30, 2013.

Hancock Askew & Co., LLP, the independent registered certified public accounting firm that audited the consolidated financial statements included in this Annual Report on Form 10-K, has also audited the effectiveness of our internal control over financial

reporting as of September 30, 2013, as stated in their report which appears in Item 8.

CHANGE IN INTERNAL CONTROL OVER FINANCIAL REPORTING

During the fourth quarter of 2013, there were no changes in our internal control over financial reporting that have materially affected, or are reasonably likely to materially affect, our internal control over financial reporting, including any corrective actions with regards to material weaknesses.

INHERENT LIMITATIONS OVER INTERNAL CONTROLS

Our internal control over financial reporting is designed to provide reasonable assurance regarding the reliability of financial reporting and the preparation of consolidated financial statements for external purposes in accordance with generally accepted accounting principles. Our internal control over financial reporting includes those policies and procedures that:

| i. | pertain to the maintenance of records that, in reasonable detail, accurately and fairly reflect the transactions and dispositions of our assets;

| ii. | provide reasonable assurance that transactions are recorded as necessary to permit preparation of consolidated financial statements in accordance with generally accepted accounting principles, and that our receipts and expenditures are being made only in accordance with authorizations of our management and directors; and

| iii. | provide reasonable assurance regarding prevention or timely detection of unauthorized acquisition, use or disposition of our assets that could have a material effect on the consolidated financial statements.

Internal control over financial reporting cannot provide absolute assurance of achieving financial reporting objectives because of its inherent limitations, including the possibility of human error and circumvention by collusion or overriding of controls. Accordingly, even an effective internal control system may not prevent or detect material misstatements on a timely basis. Also, projections of any evaluation of effectiveness to future periods are subject to the risk that controls may become inadequate because of changes in conditions or that the degree of compliance with the policies or procedures may deteriorate.

ITEM 9B. OTHER INFORMATION.

None.

PART III

Item 10. DIRECTORS, EXECUTIVE OFFICERS AND CORPORATE GOVERNANCE.

Information regarding the Company’s executive officers is set forth under the caption "Executive Officers of the Registrant" in Part I of this Form 10-K. Information concerning directors (including the disclosure regarding audit committee financial experts), required in response to this Item 10, is included under the captions "Election of Directors", "Board Leadership Structure and Committee Membership – Audit Committee" and "Section 16(a) Beneficial Ownership Reporting Compliance" in the Company's Proxy Statement and such information is incorporated herein by reference. The Proxy Statement will be filed with the Securities and Exchange Commission not later than December 31, 2013.

The Company has adopted a Financial Code of Ethical Conduct applicable to its principal executive officers, principal financial officers and principal accounting officers. A copy of this Financial Code of Ethical Conduct is filed as Exhibit 14 to this Form 10-K. The Financial Code of Ethical Conduct is available on our web site at www.patriottrans.com under the heading Corporate Governance.

Item 11. EXECUTIVE COMPENSATION.

Information required in response to this Item 11 is included under the captions "Compensation Discussion and Analysis," "Executive Compensation," "Compensation Committee Report," "Non-Employee Director Compensation," "Board Leadership Structure and Committee Membership – Compensation Committee," and "Shareholder Return Performance" in the Company's Proxy Statement and such information is incorporated herein by reference. The Proxy Statement will be filed with the Securities and Exchange Commission not later than December 31, 2013.

Item 12. SECURITY OWNERSHIP OF CERTAIN BENEFICIAL OWNERS AND MANAGEMENT AND RELATED STOCKHOLDER MATTERS.

Information required in response to this Item 12 is included under the captions "Common Stock Ownership of Certain Beneficial Owners" and "Common Stock Ownership by Directors and Executive Officers" in the Company's Proxy Statement and such information is incorporated herein by reference. The Proxy Statement will be filed with the Securities and Exchange Commission not later than December 31, 2013.

Equity Compensation Plan Information

|  |  |  |  |  |  |  | Number of

|  |  |  |  |  |  |  | Securities
|  |  |  |  |  |  |  | remaining
|  |  |  |  |  |  |  | available
|  | Number of |  |  |  |  |  | for future
|  | Securities |  |  |  | Weighted |  | issuance
|  | to be |  |  |  | Average |  | under equity
|  | issued upon |  |  |  | exercise |  | compensation
|  | exercise of |  |  |  | price of |  | plans
|  | outstanding |  |  |  | outstanding |  | (excluding
|  | options, |  |  |  | options, |  | securities
|  | warrants |  |  |  | warrants |  | reflected in
|  | and rights |  |  |  | and rights |  | column (a))
Plan Category |  | (a) |  |  |  | (b) |  | (c)
Equity compensation |  |  |  |  |  |  |  |
plans approved by |  |  |  |  |  |  |  |
security holders |  | 414,590 |  |  | $ | 20.40 |  | 537,880
Equity compensation |  |  |  |  |  |  |  |
plans not approved |  |  |  |  |  |  |  |
by security holders |  | 0 |  |  |  | 0 |  | 0
Total |  | 414,590 |  |  | $ | 20.40 |  | 537,880

Item 13. CERTAIN RELATIONSHIPS AND RELATED TRANSACTIONS, AND DIRECTOR INDEPENDENCE.

Information required in response to this Item 13 is included under the caption “Related Party Transactions", “Corporate Governance”, and “Board Leadership Structure and Committee Membership” in the Company's Proxy Statement and such information is incorporated herein by reference. The Proxy Statement will be filed with the Securities and Exchange Commission not later than December 31, 2013.

Item 14. PRINCIPAL ACCOUNTING FEES AND SERVICES.

Information required in response to this Item 14 is included under the captions “Independent Registered Public Accounting Firm” in the Company’s Proxy Statement and such information is incorporated herein by reference. The Proxy Statement will be filed with the Securities and Exchange Commission not later than December 31, 2013.

PART IV

Item 15. EXHIBITS, FINANCIAL STATEMENT SCHEDULES.

(a) (1) and (2) Financial Statements and Financial Statement Schedules.

The response to this item is submitted as a separate section. See Index to Financial Statements and Financial Statement Schedules on page 29 of this Form 10-K.

(3) Exhibits.

The response to this item is submitted as a separate section. See Exhibit Index on pages 26 through 28 of this Form 10-K.

SIGNATURES

Pursuant to the requirements of Section 13 or 15(d) of the Securities Exchange Act of 1934, the registrant has duly caused this report to be signed on its behalf by the undersigned, thereunto duly authorized.

|  |  | Patriot Transportation Holding, Inc.
Date: December 4, 2013 |  | By | THOMPSON S. BAKER II |
|  |  | Thompson S. Baker II |
|  |  | President and Chief Executive
|  |  | Officer (Principal Executive Officer)
|  | By | JOHN D. MILTON, JR. |
|  |  | John D. Milton, Jr. |
|  |  | Executive Vice President, Treasurer,
|  |  | Secretary and Chief Financial Officer
|  |  | (Principal Financial Officer)
|  | By | JOHN D. KLOPFENSTEIN |
|  |  | John D. Klopfenstein |
|  |  | Controller and Chief Accounting
|  |  | Officer (Principal Accounting Officer)

Pursuant to the requirements of the Securities Exchange Act of 1934, this report has been signed below by the following persons on behalf of the registrant and in the capacities indicated on December 4, 2013.

THOMPSON S. BAKER II |  | CHARLES E. COMMANDER III |
Thompson S. Baker II |  | Charles E. Commader III |
President and Chief |  | Director |
Executive Officer |  |  |
(Principal Executive Officer) |  |  |
|  | LUKE E. FICHTHORN III |
|  | Luke E. Fichthorn III |
JOHN D. MILTON, JR. |  | Director |
John D. Milton, Jr. |  |  |
Executive Vice President, Treasurer, |  |
Secretary and Chief Financial |  | ROBERT H. PAUL III |
Officer (Principal Financial Officer) | Robert H. Paul III |
|  | Director |
JOHN D. KLOPFENSTEIN |  |  |
John D. Klopfenstein |  | H. W. SHAD III |
Controller and Chief Accounting | H. W. Shad III |
Officer (Principal Accounting Officer) | Director |
JOHN D. BAKER II |  | MARTIN E. STEIN, JR. |
John D. Baker II |  | Martin E. Stein, Jr. |
Executive Chairman |  | Director |
JOHN E. ANDERSON |  | JAMES H. WINSTON |
John E. Anderson |  | James H. Winston |
Director |  | Director |
EDWARD L. BAKER |  |  |
Edward L. Baker |  |  |
Director, Chairman Emeritus |  |  |

PATRIOT TRANSPORTATION HOLDING, INC.

FORM 10-K FOR THE FISCAL YEAR ENDED SEPTEMBER 30, 2013

EXHIBIT INDEX

[Item 14(a)(3)]

(3)(a)(1) | Articles of Incorporation of Patriot Transportation Holding, Inc., incorporated by reference to the corresponding exhibit filed with Form S-4 dated December 13, 1988. File No. 33-26115.
(3)(a)(2) | Amendment to the Articles of Incorporation of Patriot Transportation Holding, Inc. filed with the Secretary of State of Florida on February 19, 1991 incorporated by reference to the corresponding exhibit filed with Form 10-K for the fiscal year ended September 30, 1993. File No. 33-26115.
(3)(a)(3) | Amendments to the Articles of Incorporation of Patriot Transportation Holding, Inc. filed with the Secretary of State of Florida on February 7, 1995, incorporated by reference to an appendix to the Company’s Proxy Statement dated December 15, 1994. File No. 33-26115.
(3)(a)(4) | Amendment to the Articles of Incorporation of Patriot Transportation Holding, Inc., filed with the Florida Secretary of State on May 6, 1999 incorporated by reference to a form of such amendment filed as Exhibit 4 to the Company’s Form 8-K dated May 5, 1999. File No. 33-26115.

(3)(a)(5) | Amendment to the Articles of Incorporation of Patriot Transportation Holding, Inc. filed with the Secretary of State of Florida on February 21, 2000, incorporated by reference to the corresponding exhibit filed with Form 10-Q for the quarter ended March 31, 2000. File No. 33-26115.
(3)(b)(1) | Amended and Restated Bylaws of Patriot Transportation Holding, Inc. adopted August 3, 2005, incorporated by reference to Exhibit 3.1 to the Company’s Form 8-K dated August 3, 2005. File No. 33-26115.
(4)(a) | Articles III, VII and XII of the Articles of Incorporation of Patriot Transportation Holding, Inc, incorporated by reference to an exhibit filed with Form S-4 dated December 13, 1988. And amended Article III, incorporated by reference to an exhibit filed with Form 10-K for the fiscal year ended September 30, 1993. And Articles XIII and XIV, incorporated by reference to an appendix filed with the Company’s Proxy Statement dated December 15, 1994. File No. 33-26115.
(4)(b) | Specimen stock certificate of Patriot Transportation Holding, Inc, incorporated by reference to an exhibit filed with Form S-4 dated December 13, 1988. File No. 33-26115.
(10)(a) | Various lease backs and mining royalty agreements with Florida Rock Industries, Inc., none of which are presently believed to be material individually, except for the Mining Lease Agreement dated September 1, 1986, between Florida Rock Industries Inc. and Florida Rock Properties, Inc., successor by merger to Grandin Land, Inc. (see Exhibit (10)(c)), but all of which may be material in the aggregate, incorporated by reference to an exhibit filed with Form S-4 dated December 13, 1988. File No. 33-26115.
(10)(b) | License Agreement, dated June 30, 1986, from Florida Rock Industries, Inc. to Florida Rock & Tank Lines, Inc. to use "Florida Rock" in corporate names, incorporated by reference to an exhibit filed with Form S-4 dated December 13, 1988. File No. 33-26115.

(10)(c) | Mining Lease Agreement, dated September 1, 1986, between Florida Rock Industries, Inc. and Florida Rock Properties, Inc., successor by merger to Grandin Land, Inc., incorporated by reference to an exhibit previously filed with Form S-4 dated December 13, 1988. File No. 33-26115.
(10)(d) | Summary of Medical Reimbursement Plan of Patriot Transportation Holding, Inc., incorporated by reference to an exhibit filed with Form 10-K for the fiscal year ended September 30, 1993. File No. 33-26115.
(10)(e) | Summary of Management Incentive Compensation Plans, incorporated by reference to an exhibit filed with Form 10-K for the fiscal year ended September 30, 1994. File No. 33-26115.
(10)(f) | Management Security Agreements between the Company and certain officers, incorporated by reference to a form of agreement previously filed (as Exhibit (10)(I)) with Form S-4 dated December 13, 1988. File No. 33-26115.
(10)(g)(1) | Patriot Transportation Holding, Inc. 2000 Stock Option Plan, incorporated by reference to an appendix to the Company’s Proxy Statement dated December 15, 1999. File No. 33-26115.
(10)(g)(2) | Patriot Transportation Holding, Inc. 2006 Stock Incentive Plan, incorporated by reference to an appendix to the Company’s Proxy Statement dated December 29, 2005. File No. 33-26115.
(10)(h) | Amended and Restated Revolving Credit Agreement dated September 30, 2008 among Patriot Transportation Holding, Inc. as Borrower, the Lenders from time to time party hereto and Wachovia Bank, National Association as Administrative Agent, incorporated by reference to the Company’s Form 8-K dated October 7, 2008. File No. 33-26115.
(10)(i) | The Company and its consolidated subsidiaries have other long-term debt agreements, none of which exceed 10% of the total consolidated assets of the Company and its subsidiaries, and the Company agrees to furnish copies of such agreements and constituent documents to the Commission upon request.
(10)(k) | Joint Venture Agreement between Florida Rock Industries, Inc. and Florida Rock Properties, incorporated by reference to an exhibit filed with Form 10-K for the fiscal year ended September 30, 2006. File No. 33-26115.
(10)(l) | Letter Agreement between the Company and David H. deVilliers, Jr., incorporated by reference to an exhibit filed with Form 10-Q for the quarter ended December 31, 2007. File No. 33-26115.
(10)(m) | Letter Agreement between the Company and Robert E. Sandlin, incorporated by reference to an exhibit filed with Form 10-Q for the quarter ended December 31, 2007. File No. 33-26115.
(10)(n) | Letter Agreement between the Company and John D. Klopfenstein, incorporated by reference to an exhibit filed with Form 10-Q for the quarter ended December 31, 2007. File No. 33-26115.

(10)(s) | Limited Liability Company Agreement of Riverfront Investment Partners I LLC. Between FRP Riverfront I LLC and MRP SE Waterfront Residential LLC. incorporated by reference to an exhibit filed with Form 10-Q for the quarter ended June 30, 2013. File No. 33-26115.
(13) | The Company's 2013 Annual Report to shareholders, portions of which are incorporated by reference in this Form 10-K. Those portions of the 2013 Annual Report to Shareholders which are not incorporated by reference shall not be deemed to be filed as part of this Form 10-K.
(14) | Financial Code of Ethical Conduct between the Company, Chief Executive Officers and Financial Managers, adopted December 4, 2002, incorporated by reference to an exhibit filed with Form 10-K for the year ended September 30, 2003. File No. 33-26115.
(21) | Subsidiaries of Registrant at September 30, 2012: Florida Rock & Tank Lines, Inc. (a Florida corporation); Florida Rock Properties, Inc. (a Florida corporation); FRP Development Corp. (a Maryland corporation); FRP Maryland, Inc. (a Maryland corporation); 34 Loveton Center LLC (a Maryland limited liability company); FRTL, Inc. (a Florida corporation); SunBelt Transport, Inc. (a Florida corporation); Oz LLC(a Maryland limited liability company); 1502 Quarry, LLC(a Maryland limited liability company); FRP Lakeside LLC #1 (a Maryland limited company); FRP Lakeside LLC #2 (a Maryland limited liability company); FRP Lakeside LLC #3 (a Maryland limited liability company); FRP Lakeside LLC #4 (a Maryland limited liability company); FRP Lakeside LLC #5 (a Maryland limited liability company); FRP Hillside LLC (a Maryland limited liability company); FRP Hillside LLC #2 (a Maryland limited liability company); FRP Hillside LLC #3 (a Maryland limited liability company); FRP Hillside LLC #4 (a Maryland limited liability company); FRP Windsor LLC (a Maryland limited liability company); FRP Dorsey LLC (a Maryland limited liability company); FRP Bird River LLC (a Maryland limited liability company); FRP Interchange LLC (a Maryland limited liability company); FRP Azalea LLC (a Maryland limited liability company); FRP Manassas LLC (a Maryland limited liability company); FRP Hampstead LLC (a Maryland limited liability company); FRP Hollander 95 LLC (a Maryland limited liability company); FRP Transit Business Park (a Maryland limited liability company).
(23)(a) | Consent of Hancock Askew & Co., Inc., Independent Registered Certified Public Accounting Firm, appears on page 30 of this Form 10-K.
(31)(a) | Certification of Thompson S. Baker II.
(31)(b) | Certification of Thompson S. Baker II.
(31)(c) | Certification of John D. Klopfenstein.
(32) | Certification of Chief Executive Officer, Chief Financial Officer, and Chief Accounting Officer under Section 906 of the Sarbanes-Oxley Act of 2002.
101.INS | XBRL Instance Document
101.XSD | XBRL Taxonomy Extension Schema
101.CAL | XBRL Taxonomy Extension Calculation Linkbase
101.DEF | XBRL Taxonomy Extension Definition Linkbase
101.LAB | XBRL Taxonomy Extension Label Linkbase
101.PRE | XBRL Taxonomy Extension Presentation Linkbase

PATRIOT TRANSPORTATION HOLDING, INC.

INDEX TO FINANCIAL STATEMENTS AND FINANCIAL STATEMENT SCHEDULES

(Item 15(a) (1) and 2))

|  |  | Page
Consolidated Financial Statements: |  |  |  |
Consolidated balance sheets at September 30, 2013 |  |  |  |
and 2012 |  |  | 16 | (a)
For the years ended September 30, 2013, 2012 and 2011: |  |  |  |
Consolidated statements of income |  |  | 15 | (a)
Consolidated statements of comprehensive income |  |  | 15 | (a)
Consolidated statements of cash flows |  |  | 17 | (a)
Consolidated statements of shareholders' equity |  |  | 18 | (a)
Notes to consolidated financial statements |  |  | 19-29 | (a)
Report of Independent Registered Certified Public |  |  |  |
Accounting Firm |  |  | 30-31 | (a)
Selected quarterly financial data (unaudited) |  |  | 7 | (a)
Consent of Independent Registered Certified Public |  |  |  |
Accounting Firm |  |  | 31 | (b)
Report of Independent Registered Certified Public |  |  |  |
Accounting Firm on Financial Statement Schedules |  |  | 32 | (b)
Consolidated Financial Statement Schedules: |  |  |  |
II - Valuation and qualifying accounts |  |  | 32 | (b)
III - Real estate and accumulated depreciation and |  |  |  |
depletion |  |  | 33-34 | (b)
(a) Refers to the page number in the Company's 2013 Annual Report to Shareholders. Such information is incorporated by reference in Item 8 of this Form 10-K.
(b) Refers to the page number in this Form 10-K |
All other schedules have been omitted, as they are not required under the related instructions, are inapplicable, or because the information required is included in the consolidated financial statements.

Exhibit 23

CONSENT OF INDEPENDENT REGISTERED CERTIFIED PUBLIC ACCOUNTING FIRM

We hereby consent to the incorporation by reference in the Registration Statements on Form S-8 (Nos. 333-55132, 333-125099 and 333-131475) of Patriot Transportation Holding, Inc. of our report dated December 4, 2013 relating to the consolidated financial statements and the effectiveness of Patriot Transportation Holding, Inc’s internal control over financial reporting which appears in the Annual Report to Shareholders incorporated by reference herein. We also consent to the incorporation by reference of our report dated December 4, 2013, relating to the financial statement schedules, which appear in this Form 10-K.

Hancock Askew & Co., LLP

Savannah, Georgia

December 4, 2013

REPORT OF INDEPENDENT REGISTERED CERTIFIED PUBLIC ACCOUNTING FIRM ON FINANCIAL STATEMENT SCHEDULES

To the Board of Directors of

Patriot Transportation Holding, Inc.:

Our audit of the consolidated financial statements referred to in our report dated December 4, 2013 appearing in the 2013 Annual Report to Shareholders of Patriot Transportation Holding, Inc. (which report and consolidated financial statements are incorporated by reference in this Annual Report on Form 10-K) also included an audit of the financial statement schedules listed in Item 15(a)(2) of this Form 10-K. These financial statement schedules are the responsibility of the Company’s management. Our responsibility is to express an opinion on these financial statement schedules based on our audit. In our opinion, these financial statement schedules present fairly, in all material respects, the information set forth therein when read in conjunction with the related consolidated financial statements.

Hancock Askew & Co., LLP

Savannah, Georgia

December 4, 2013

PATRIOT TRANSPORTATION HOLDING, INC.

SCHEDULE II (CONSOLIDATED) - VALUATION

AND QUALIFYING ACCOUNTS

YEARS ENDED SEPTEMBER 30, 2013, 2012 AND 2011

|  |  |  |  |  | ADDITIONS |  |  | ADDITIONS |  |  |  |  |  |  |
|  |  | BALANCE |  |  | CHARGED TO |  | CHARGED TO |  |  |  |  | BALANCE |
|  |  | AT BEGIN. |  |  | COST AND |  |  | OTHER |  |  |  |  |  | AT END |
|  |  | OF YEAR |  |  | EXPENSES |  |  | ACCOUNTS |  |  | DEDUCTIONS |  |  | OF YEAR |
Year Ended |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
September 30, 2013: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Allowance for |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
doubtful accounts |  | $ | 128,604 |  | $ | 40,184 |  | $ | — |  | $ | 6,854 | (a) | $ | 161,934 |
Accrued risk |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Insurance: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Tanklines |  | $ | 3,670,950 |  | $ | 1,919,650 |  | $ | — |  | $ | 4,053,842 |  | $ | 1,536,758 |
Sunbelt |  |  | — |  |  | — |  |  | — |  |  | — |  |  | — |
Accrued health |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
insurance |  |  | 1,248,517 |  |  | 2,211,550 |  |  | — | (c) |  | 2,561,940 | (b) |  | 898,127 |
Totals - |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
insurance |  | $ | 4,919,467 |  | $ | 4,131,200 |  | $ | — |  | $ | 6,615,782 |  | $ | 2,434,885 |
Year Ended |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
September 30, 2012: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Allowance for |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
doubtful accounts |  | $ | 117,927 |  | $ | 41,435 |  | $ | — |  | $ | 30,758 | (a) | $ | 128,604 |
Accrued risk |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Insurance: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Tanklines |  | $ | 4,879,799 |  | $ | 1,735,033 |  | $ | — |  | $ | 2,943,882 |  | $ | 3,670,950 |
Sunbelt |  |  | 29,518 |  |  | (151,505 | ) |  | — |  |  | (121,987 | ) |  | — |
Accrued health |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
insurance |  |  | 989,298 |  |  | 2,864,681 |  |  | 10,592 | (c) |  | 2,616,054 | (b) |  | 1,248,517 |
Totals - |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
insurance |  | $ | 5,898,615 |  | $ | 4,448,209 |  | $ | 10,592 |  | $ | 5,437,949 |  | $ | 4,919,467 |
Year Ended |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
September 30, 2011: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Allowance for |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
doubtful accounts |  | $ | 90,770 |  | $ | 67,628 |  | $ | — |  | $ | 40,471 | (a) | $ | 117,927 |
Accrued risk |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Insurance: |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Tanklines |  | $ | 3,909,354 |  | $ | 1,833,845 |  | $ | — |  | $ | 863,400 |  | $ | 4,879,799 |
Sunbelt |  |  | 1,109,895 |  |  | (294,478 | ) |  | — |  |  | 785,899 |  |  | 29,518 |
Accrued health |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
insurance |  |  | 967,746 |  |  | 2,339,594 |  |  | (4,670 | )(c) |  | 2,313,372 | (b) |  | 989,298 |
Totals - |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
insurance |  | $ | 5,986,995 |  | $ | 3,878,961 |  | $ | (4,670 | ) | $ | 3,962,671 |  | $ | 5,898,615 |

Note: SunBelt’s risk insurance expense for the years ended September 30, 2012 and 2011 was negative due to claims settled for less than prior estimates.

(a) Accounts written off less recoveries

(b) Payments

(c) Other comprehensive income (ASC Topic 715).

PATRIOT TRANSPORTATION HOLDING, INC.

SCHEDULE III (CONSOLIDATED)-REAL ESTATE & ACCUMULATED DEPRECIATION AND

DEPLETION (dollars in thousands)

SEPTEMBER 30, 2013

County | Encumb- rances |  | Initial cost to Company |  | Cost capi- talized subsequent to acqui- sition |  | Gross amount at which carried at end of period (a) |  | Accumulated Depreciation & Depletion |  | Year Of Constr- uction |  | Date Acquired |  | Deprecia- tion Life Computed on:
Construction Aggregates |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alachua, FL |  |  |  |  | $ | 1,442 |  |  | $ | 0 |  |  | $ | 1,442 |  |  | $ | 137 |  |  |  | n/a |  |  | 4/86 |  |  | unit
Clayton, GA |  |  |  |  |  | 369 |  |  |  | 0 |  |  |  | 369 |  |  |  | 5 |  |  |  | n/a |  |  | 4/86 |  |  | unit
Fayette, GA |  |  |  |  |  | 685 |  |  |  | 0 |  |  |  | 685 |  |  |  | 64 |  |  |  | n/a |  |  | 4/86 |  |  | unit
Lake, FL |  |  |  |  |  | 402 |  |  |  | 0 |  |  |  | 402 |  |  |  | 146 |  |  |  | n/a |  |  | 4/86 |  |  | unit
Lake Louisa, FL |  |  |  |  | 11,039 |  |  |  | 0 |  |  |  | 11,039 |  |  |  | 0 |  |  |  | n/a |  |  | 5/12 |  |  | unit
Lee, FL |  |  |  |  |  | 4,690 |  |  |  | 6 |  |  |  | 4,696 |  |  |  | 6 |  |  |  | n/a |  |  | 4/86 |  |  | unit
Monroe, GA |  |  |  |  |  | 792 |  |  |  | 0 |  |  |  | 792 |  |  |  | 281 |  |  |  | n/a |  |  | 4/86 |  |  | unit
Muscogee, GA |  |  |  |  | 369 |  |  |  | (45 | ) |  |  | 324 |  |  |  | 295 |  |  |  | n/a |  |  | 4/86 |  |  | unit
Prince Wil., VA |  |  |  |  | 299 |  |  |  | 0 |  |  |  | 299 |  |  |  | 299 |  |  |  | n/a |  |  | 4/86 |  |  | unit
Putnam, FL |  |  |  |  |  | 15,002 |  |  |  | 37 |  |  |  | 15,039 |  |  |  | 4,289 |  |  |  | n/a |  |  | 4/86 |  |  | unit
|  | 0 |  |  |  | 35,089 |  |  |  | (2 | ) |  |  | 35,087 |  |  |  | 5,522 |  |  |  |  |  |  |  |  |  |
Other Rental Property |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Wash D.C. |  |  |  |  |  | 2,957 |  |  |  | 10,200 |  |  |  | 13,157 |  |  |  | 2,387 |  |  |  | n/a |  |  | 4/86 |  |  | 15 yr.
Wash D.C. |  |  |  |  |  | 3,811 |  |  |  | 0 |  |  |  | 3,811 |  |  |  | 0 |  |  |  | n/a |  |  | 10/97 |  |  | n/a
Putnam, FL |  |  |  |  |  | 302 |  |  |  | (2 | ) |  |  | 300 |  |  |  | 283 |  |  |  | n/a |  |  | 4/86 |  |  | 5 yr.
Spalding, GA |  |  |  |  |  | 20 |  |  |  | 0 |  |  |  | 20 |  |  |  | 0 |  |  |  | n/a |  |  | 4/86 |  |  | n/a
Lake, FL |  |  |  |  |  | 1,083 |  |  |  | 0 |  |  |  | 1,083 |  |  |  | 968 |  |  |  | n/a |  |  | 4/86 |  |  | unit
Marion, FL |  |  |  |  |  | 1,180 |  |  |  | 4 |  |  |  | 1,184 |  |  |  | 599 |  |  |  | n/a |  |  | 4/86 |  |  | unit
|  | 0 |  |  |  | 9,353 |  |  |  | 10,202 |  |  |  | 19,555 |  |  |  | 4,237 |  |  |  |  |  |  |  |  |  |
Commercial Property |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Baltimore, MD |  | 2,010 |  |  |  | 439 |  |  |  | 4,662 |  |  |  | 5,101 |  |  |  | 2,518 |  |  |  | 1990 |  |  | 10/89 |  |  | 39 yr.
Baltimore, MD |  | 4,357 |  |  |  | 950 |  |  |  | 6,902 |  |  |  | 7,852 |  |  |  | 4,199 |  |  |  | 1994 |  |  | 12/91 |  |  | 39 yr.
Baltimore, MD |  | 1,486 |  |  |  | 690 |  |  |  | 2,861 |  |  |  | 3,551 |  |  |  | 1,337 |  |  |  | 2000 |  |  | 07/99 |  |  | 39 yr.
Baltimore, MD |  | 0 |  |  |  | 5,634 |  |  |  | 10,597 |  |  |  | 16,231 |  |  |  | 664 |  |  |  | 2008 |  |  | 12/02 |  |  | 39 yr.
Baltimore City, MD | 0 |  |  |  | 5,750 |  |  |  | 4,755 |  |  |  | 10,505 |  |  |  | 482 |  |  |  | 2010 |  |  | 12/10 |  |  | 39 yr.
Baltimore City, MD | 0 |  |  |  | 7,442 |  |  |  | 225 |  |  |  | 7,667 |  |  |  | 73 |  |  |  | n/a |  |  | 6/13 |  |  | 39 yr.
Duval, FL |  | 0 |  |  |  | 2,416 |  |  |  | 541 |  |  |  | 2,957 |  |  |  | 2,731 |  |  |  | n/a |  |  | 4/86 |  |  | 25 yr.
Harford, MD |  | 1,194 |  |  |  | 31 |  |  |  | 3,830 |  |  |  | 3,861 |  |  |  | 1,923 |  |  |  | 1998 |  |  | 8/95 |  |  | 39 yr.
Harford, MD |  | 2,405 |  |  |  | 50 |  |  |  | 5,699 |  |  |  | 5,749 |  |  |  | 2,241 |  |  |  | 1999 |  |  | 8/95 |  |  | 39 yr.
Harford, MD |  | 3,787 |  |  |  | 85 |  |  |  | 7,091 |  |  |  | 7,176 |  |  |  | 3,155 |  |  |  | 2001 |  |  | 8/95 |  |  | 39 yr.
Harford, MD |  | 0 |  |  |  | 92 |  |  |  | 1,487 |  |  |  | 1,579 |  |  |  | 0 |  |  |  | n/a |  |  | 8/95 |  |  | 39 yr.
Harford, MD |  | 2,873 |  |  |  | 88 |  |  |  | 10,133 |  |  |  | 10,221 |  |  |  | 3,534 |  |  |  | 2007 |  |  | 8/95 |  |  | 39 yr.
Harford, MD |  | 2,155 |  |  |  | 155 |  |  |  | 12,331 |  |  |  | 12,486 |  |  |  | 3,222 |  |  |  | 2009 |  |  | 8/95 |  |  | 39 yr.
Howard, MD |  | 1,644 |  |  |  | 2,859 |  |  |  | 4,750 |  |  |  | 7,609 |  |  |  | 3,841 |  |  |  | 1996 |  |  | 9/88 |  |  | 39 yr.
Howard, MD |  | 1,344 |  |  |  | 2,473 |  |  |  | 981 |  |  |  | 3,454 |  |  |  | 1,251 |  |  |  | 2000 |  |  | 3/00 |  |  | 39 yr.
Anne Arun, MD | 0 |  |  |  | 715 |  |  |  | 8,865 |  |  |  | 9,580 |  |  |  | 5,123 |  |  |  | 1989 |  |  | 9/88 |  |  | 39 yr.
Anne Arun, MD | 7,379 |  |  |  | 950 |  |  |  | 13,120 |  |  |  | 14,070 |  |  |  | 4,105 |  |  |  | 2003 |  |  | 5/98 |  |  | 39 yr.
Anne Arun, MD | 0 |  |  |  | 1,525 |  |  |  | 10,800 |  |  |  | 12,325 |  |  |  | 2,763 |  |  |  | 2005 |  |  | 8/04 |  |  | 39 yr.
Anne Arun, MD | 4,012 |  |  |  | 737 |  |  |  | 5,324 |  |  |  | 6,061 |  |  |  | 1,330 |  |  |  | 2006 |  |  | 1/03 |  |  | 39 yr.
Anne Arun, MD | 0 |  |  |  | 667 |  |  |  | 10,259 |  |  |  | 10,926 |  |  |  | 1,584 |  |  |  | 2012 |  |  | 7/07 |  |  | 39 yr.
Norfolk, VA |  | 5,577 |  |  |  | 7,512 |  |  |  | 0 |  |  |  | 7,512 |  |  |  | 2,001 |  |  |  | 2004 |  |  | 10/04 |  |  | 39 yr.
Prince Wil., VA |  | 0 |  |  |  | 7,324 |  |  |  | 18,113 |  |  |  | 25,437 |  |  |  | 202 |  |  |  | n/a |  |  | 12/05 |  |  | 39 yr.
Newcastle Co., DE | 9,681 |  |  |  | 11,559 |  |  |  | 2,268 |  |  |  | 13,827 |  |  |  | 3,457 |  |  |  | 2004 |  |  | 4/04 |  |  | 39 yr.
Carroll, MD |  | 0 |  |  |  | 4,720 |  |  |  | 2,305 |  |  |  | 7,025 |  |  |  | 0 |  |  |  | n/a |  |  | 3/08 |  |  | n/a
|  | 49,904 |  |  |  | 64,863 |  |  |  | 147,899 |  |  |  | 212,762 |  |  |  | 51,736 |  |  |  |  |  |  |  |  |  |
Investment Property |  |  |  | 2,231 |  |  |  | (703 | ) |  |  | 1,528 |  |  |  | 672 |  |  |  | n/a |  |  | 4/86 |  |  | n/a
GRAND TOTALS | $ | 49,904 |  |  | $ | 111,536 |  |  | $ | 157,396 |  |  | $ | 268,932 |  |  | $ | 62,167 |  |  |  |  |  |  |  |  |  |

(a) The aggregate cost for Federal income tax purposes is $239,194.

PATRIOT TRANSPORTATION HOLDING, INC.

SCHEDULE III (CONSOLIDATED) - REAL ESTATE AND

ACCUMULATED DEPRECIATION AND DEPLETION

YEARS ENDED SEPTEMBER 30, 2013, 2012 AND 2011

(In thousands)

|  |  | 2013 |  |  |  | 2012 |  |  |  | 2011 |
Gross Carrying Cost of Real Estate: |  |  |  |  |  |  |  |  |  |  |  |
Balance at beginning of period |  | $ | 262,564 |  |  | $ | 241,253 |  |  | $ | 225,630 |
Additions during period: |  |  |  |  |  |  |  |  |  |  |  |
Amounts capitalized |  |  | 22,228 |  |  |  | 21,380 |  |  |  | 15,899 |
Deductions during period: |  |  |  |  |  |  |  |  |  |  |  |
Cost of real estate sold |  |  | (10,021 | ) |  |  | (69 | ) |  |  | (276 | )
Other |  |  | (5,839 | ) |  |  | — |  |  |  | — |
Balance at close of period |  | $ | 268,932 |  |  | $ | 262,564 |  |  | $ | 241,253 |
Accumulated Depreciation & Depletion: |  |  |  |  |  |  |  |  |  |  |  |
Balance at beginning of period |  | $ | 58,997 |  |  | $ | 54,110 |  |  | $ | 49,499 |
Additions during period: |  |  |  |  |  |  |  |  |  |  |  |
Charged to cost & expense |  |  | 4,938 |  |  |  | 4,956 |  |  |  | 4,611 |
Deductions during period: |  |  |  |  |  |  |  |  |  |  |  |
Real estate sold |  |  | (461 | ) |  |  | (69 | ) |  |  | — |
Other |  |  | (1,307 | ) |  |  | — |  |  |  | — |
Balance at close of period |  | $ | 62,167 |  |  | $ | 58,997 |  |  | $ | 54,110 |