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Income Taxes (Tables)
12 Months Ended
Dec. 31, 2021
Income Tax Disclosure [Abstract]  
Components of the Company's Deferred Income Tax Assets (Liabilities) The significant components of the Company's deferred income tax assets (liabilities) were as follows (in thousands):
December 31,
20212020
Deferred income tax assets:
Federal U.S. net operating loss carryforward$175,802 $136,086 
State net operating loss carryforward49,965 37,465 
Research and development credit, net60,514 50,271 
Orphan drug credit, net24,858 23,409 
Operating lease liabilities7,008 8,048 
Deferred revenue1,245 3,132 
Other16,727 14,285 
Gross deferred income tax assets336,119 272,696 
Valuation allowance(327,595)(263,403)
Net deferred income tax assets8,524 9,293 
Deferred income tax liabilities:
Depreciation(1,688)(2,123)
Operating lease ROU assets(4,576)(5,316)
Prepaid expenditures(2,260)(1,854)
Gross deferred income tax liabilities(8,524)(9,293)
Net deferred income tax asset/(liability)$— $— 
Reconciliation of Reported Estimated Income Tax Benefit The reconciliation of the reported estimated income tax benefit to the amount that would result by applying the U.S. federal statutory tax rate to the net income is as follows (in thousands):
Year Ended December 31,
202120202019
United States federal tax at statutory rate$(42,445)$(27,245)$(31,880)
State taxes (net of federal benefit)(12,806)(8,100)(9,524)
Deferred income tax adjustments473 344 2,004 
Research credit, net(10,243)(14,691)(5,830)
Orphan drug credit, net(1,449)(528)(301)
Other permanent items1,199 1,156 1,206 
Equity-based compensation1,079 554 1,889 
Change in valuation allowance64,192 48,510 42,436 
Income tax expense/(benefit)$— $— $— 
Reconciliation of the Beginning and Ending Amount of Gross Unrecognized Tax Benefits A reconciliation of the beginning and ending amount of gross unrecognized tax benefits is as follows (in thousands):
Year Ended December 31,
202120202019
Beginning balance$6,126 $4,950 $4,318 
Increases for current year tax positions965 839 637 
Increases/(decreases) for prior year tax positions106 337 (5)
Ending balance$7,197 $6,126 $4,950