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DEBT (Details) (USD $) | 12 Months Ended |
--- | --- | ---
Dec. 31, 2012 | Dec. 31, 2011
Debt Instrument [Line Items] |  |  |  |
Total debt, including short term debt | $ 6,171,000 |  | $ 11,722,000 |
Short term debt | 0 |  | (3,082,000) |
Current maturities of long term debt | (6,171,000) |  | (3,703,000) |
Long term debt less current maturities | 0 |  | 4,937,000 |
Note payable due, non-payment constituting an event of default | 1,400,000 |  |  |
2013 | 6,171,000 |  |  |
Notes Payable, Other Payables | PGxHealth Note Payable (the First Note) |  |  |  |
Debt Instrument [Line Items] |  |  |  |
Total debt, including short term debt | 6,171,000 | [1] | 8,640,000 | [1]
Debt instrument, term | 3 years |  |  |
Debt instrument, interest rate, stated percentage | 10.00% |  |  |
Percentage of proceeds from the issuance or sale of equity | 25.00% |  |  |
Notes Payable, Other Payables | PGxHealth Note Payable (the First Note) | Minimum |  |  |  |
Debt Instrument [Line Items] |  |  |  |
Proceeds from issuance or sale of equity | 6,000,000 |  |  |
Notes Payable, Other Payables | PGxHealth Note Payable (the Second Note) |  |  |  |
Debt Instrument [Line Items] |  |  |  |
Total debt, including short term debt | 0 | [2] | 82,000 | [2]
Debt instrument, term | 1 year |  |  |
Debt instrument, interest rate, stated percentage | 6.50% |  |  |
Debt instrument, number of monthly installments | 12 |  |  |
Convertible Debt | Third Security Convertible Promissory Notes |  |  |  |
Debt Instrument [Line Items] |  |  |  |
Total debt, including short term debt | 0 | [3] | 3,000,000 | [3]
Debt instrument, interest rate, stated percentage | 16.00% |  |  |
Convertible notes, Amount of Securities Called by Note | $ 3,000,000 |  |  |
[1] | The First Note is a three year senior secured promissory note to PGxHealth, LLC entered into on December 29, 2010 in conjunction with our acquisition of the FAMILION family of genetic tests from PGxHealth. Interest is payable at 10% per year with quarterly interest payments through March 29, 2012. Thereafter, quarterly installments will include both principal and interest through December 30, 2013.On February 7, 2013, we entered into a Forbearance Agreement with Dogwood Pharmaceuticals, Inc. (the “Lender”), a wholly owned subsidiary of Forest Laboratories, Inc. and successor-in-interest to PGxHealth, LLC (“PGX”), with an effective date of December 31, 2012 (the “Forbearance Agreement”). In December 2012, we commenced discussions with the Lender to defer the payment due on December 31, 2012 until March 31, 2013. As of December 31, 2012, an aggregate of $1.4 million was due and payable under the Note by Transgenomic, and non-payment would constitute an event of default (the “Event of Default”) under the Note and that certain Security Agreement, dated as of December 29, 2010, entered into between Transgenomic and PGX (the “Security Agreement”). Pursuant to the Forbearance Agreement, the Lender agreed, among other things, to forbear from exercising its rights and remedies under the Note and the Security Agreement as a result of the Event of Default, effective as of December 31, 2012.The entire unpaid balance of the First Note will become immediately due and payable if: (i) we fail to make timely payments under the Notes; (ii) we make an assignment for the benefit of creditors; (iii) we file for bankruptcy; or (iv) upon any event of default under the Security Agreement. Additionally, under the terms of the First Note, if we consummate an equity financing that involves the receipt by us of net proceeds of not less than $6,000,000, then we shall, upon the consummation of such equity financing, pay to PGxHealth the lesser of: (i) 25% of the gross proceeds received from such financing; and (ii) the then-outstanding balance under the First Note.The First Note is secured by the assets of Transgenomic.
[2] | The Second Note was a one year senior secured promissory note to PGxHealth, LLC entered into on December 31, 2010 for facility improvements made to the CLIA certified laboratory in New Haven, Connecticut. Interest is payable at 6.5% per year with the principal and interest payable in twelve monthly installments with the final payment made on January 3, 2012.
[3] | The Third Security Promissory Notes were convertible promissory notes to Third Security Senior Staff 2008 LLC, Third Security Staff 2010 LLC and Third Security Incentive 2010 LLC entered into on December 30, 2011 with a maturity date of March 31, 2012. Interest was payable at 16% per year. The Third Security Promissory Notes automatically convert into the same class(es) or series and at the same price as the equity securities of the Company sold upon the first sale or issuance of its equity securities, after December 30, 2011, in the aggregate amount of at least $3.0 million, and provide that it shall be due and payable if it has not been converted prior to March 31, 2012. In connection with a private placement conducted by the Company in February 2012, the Third Security Promissory Notes converted into equity securities of the Company on the same terms as issued to investors in the private placement.

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