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Business, Acquisition of Assets and Basis of Presentation (Details Textual) |  | 1 Months Ended | 9 Months Ended |  |
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Jun. 08, 2015 | Oct. 31, 2015 USD ($) | May. 31, 2015 USD ($) | Mar. 31, 2016 USD ($) | Mar. 31, 2015 USD ($) | Oct. 05, 2015 USD ($) | May. 20, 2015 USD ($)
Business Acquisition [Line Items] |  |  |  |  |  |  |
Stockholders' Equity, Reverse Stock Split |  |  |  | On June 8, 2015, in connection with the reincorporation as a Delaware corporation, the Company effected a reverse stock split in which each common stock holder received one share of common stock for every 12.174 shares then outstanding (the “Reverse Stock Split”). |  |  |
Stockholders' Equity Note, Stock Split, Conversion Ratio | 12.174 |  |  |  |  |  |
Payments to Acquire Businesses, Gross |  |  |  | $ 540,000 | $ 0 |  |
Business Combination, Contingent Consideration, Liability, Total |  |  |  | 1,155,000 |  |  |
Developed Technology Rights [Member] |  |  |  |  |  |  |
Business Acquisition [Line Items] |  |  |  |  |  |  |
Amortization of Intangible Assets |  |  |  | 520,000 |  |  |
Trade Names [Member] |  |  |  |  |  |  |
Business Acquisition [Line Items] |  |  |  |  |  |  |
Amortization of Intangible Assets |  |  |  | 140,000 |  |  |
Customer Contracts [Member] |  |  |  |  |  |  |
Business Acquisition [Line Items] |  |  |  |  |  |  |
Amortization of Intangible Assets |  |  |  | $ 810,000 |  |  |
Prostascint Business [Member] |  |  |  |  |  |  |
Business Acquisition [Line Items] |  |  |  |  |  |  |
Business Combination, Recognized Identifiable Assets Acquired and Liabilities Assumed, Assets, Total |  |  | $ 2,400,000 |  |  | $ 1,799,000 | $ 2,391,000
Payments to Acquire Businesses, Gross |  |  | 1,000,000 |  |  |  |
Business Combination, Consideration Transferred, Liabilities Incurred |  |  | 227,000 |  |  |  |
Business Combination, Contingent Consideration Arrangements, Change in Range of Outcomes, Contingent Consideration, Liability, Reasons |  |  |  | Aytu also will pay 8% as contingent consideration on its net sales made after October 31, 2017, payable up to a maximum aggregate payment of an additional $2.5 million. |  |  |
Business Combination, Contingent Consideration Arrangements, Change in Range of Outcomes, Contingent Consideration, Liability, Value, High |  |  | $ 2,500,000 |  |  |  |
Business Combination Contingent Consideration Percentage |  |  | 8.00% |  |  |  |
Business Combination, Contingent Consideration Arrangements, Change in Amount of Contingent Consideration, Asset |  |  | $ 664,000 | $ 699,000 |  |  |
Business Combination Consideration Transferred Product Inventory |  |  | $ 500,000 |  |  |  |
Jazz Pharmaceuticals Inc [Member] | Prosta Scint [Member] | Maximum [Member] |  |  |  |  |  |  |
Business Acquisition [Line Items] |  |  |  |  |  |  |
Finite-Lived Intangible Assets, Remaining Amortization Period |  |  |  | 10 years |  |  |
Jazz Pharmaceuticals Inc [Member] | Prosta Scint [Member] | Developed Technology Rights [Member] |  |  |  |  |  |  |
Business Acquisition [Line Items] |  |  |  |  |  |  |
Finite-Lived Intangible Assets, Gross |  |  |  | $ 790,000 |  |  |
Jazz Pharmaceuticals Inc [Member] | Prosta Scint [Member] | Trade Names [Member] |  |  |  |  |  |  |
Business Acquisition [Line Items] |  |  |  |  |  |  |
Finite-Lived Intangible Assets, Gross |  |  |  | 80,000 |  |  |
Jazz Pharmaceuticals Inc [Member] | Prosta Scint [Member] | Customer Contracts [Member] |  |  |  |  |  |  |
Business Acquisition [Line Items] |  |  |  |  |  |  |
Finite-Lived Intangible Assets, Gross |  |  |  | 720,000 |  |  |
Primsol Business [Member] |  |  |  |  |  |  |
Business Acquisition [Line Items] |  |  |  |  |  |  |
Payments to Acquire Businesses, Gross |  | $ 500,000 |  |  |  |  |
Business Combination, Consideration Transferred, Liabilities Incurred |  | 142,000 |  |  |  |  |
Business Combination Consideration Transferred Inventory |  | 102,000 |  | 102,000 |  |  |
Business Combination Consideration Transferred Product Inventory |  | 40,000 |  |  |  |  |
Business Combination Consideration Transferred Work In Process Inventory |  |  |  | $ 80,000 |  |  |
Primsol Business [Member] | Maximum [Member] |  |  |  |  |  |  |
Business Acquisition [Line Items] |  |  |  |  |  |  |
Finite-Lived Intangible Assets, Remaining Amortization Period |  |  |  | 6 years |  |  |
Primsol Business [Member] | Paid on April 1, 2016 [Member] |  |  |  |  |  |  |
Business Acquisition [Line Items] |  |  |  |  |  |  |
Business Combination, Consideration Transferred, Liabilities Incurred |  | 500,000 |  |  |  |  |
Primsol Business [Member] | No Later Than June 30, 2016 [Member] |  |  |  |  |  |  |
Business Acquisition [Line Items] |  |  |  |  |  |  |
Business Combination, Consideration Transferred, Liabilities Incurred |  | 500,000 |  |  |  |  |
Primsol Business [Member] | No Later Than September 30, 2016 [Member] |  |  |  |  |  |  |
Business Acquisition [Line Items] |  |  |  |  |  |  |
Business Combination, Consideration Transferred, Liabilities Incurred |  | $ 250,000 |  |  |  |  |

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