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Business, Basis of Presentation, License and Supply Agreements (Details Textual) - USD ($)
 1 Months Ended 3 Months Ended
Aug. 10, 2018
Oct. 31, 2018
Jun. 30, 2018
Jun. 30, 2015
Sep. 30, 2018
Sep. 30, 2017
Jul. 31, 2018
Jun. 11, 2018
Jun. 30, 2016
Business, Basis of Presentation, Business Combinations, Divestitures, License/Supply Agreement and Merger (Textual)                  
Stockholders' equity, reverse stock split, description Aytu effected a reverse stock split in which each common stockholder received one share of common stock for every 20 shares outstanding (herein referred to collectively as the “Reverse Stock Split”). All share and per share amounts in this report have been adjusted to reflect the effect of this Reverse Stock Split.                
Upfront amount     $ 297,000            
Maximum aggregate payout for sale         $ 76,000        
Amortization of intangible assets         451,957 $ 385,841      
Net sales         1,431,809 1,076,368      
Additional paid in capital     92,681,918   92,834,031        
Sale of its securities to investors and the exercise of warrants by investors       $ 65,100,000          
Subsequent Event [Member]                  
Business, Basis of Presentation, Business Combinations, Divestitures, License/Supply Agreement and Merger (Textual)                  
Inclusive sale of its securities to investors and exercise of warrants by investors   $ 15,200,000              
ZolpiMist [Member]                  
Business, Basis of Presentation, Business Combinations, Divestitures, License/Supply Agreement and Merger (Textual)                  
Upfront amount     400,000            
Amortization of intangible assets         $ 116,000 0      
License agreement, description         Agreement was valued at $3.2 million and will be amortized over the life of the license agreement up to seven years.        
Contingent consideration accretion expenses         $ 59,000 0      
Additional paid in capital             $ 300,000    
Royalty payment         52,000        
Contingent consideration royalty payments               $ 2,600,000  
Natesto [Member]                  
Business, Basis of Presentation, Business Combinations, Divestitures, License/Supply Agreement and Merger (Textual)                  
Amortization of intangible assets         $ 330,000 330,000      
Maximum aggregate amount payable milestone payments, description         <p style="margin: 0pt">The maximum aggregate amount payable under such milestone payments is $37.5 million.</p>        
Net identifiable asset acquired         $ 10,500,000        
Monte Carlo [Member]                  
Business, Basis of Presentation, Business Combinations, Divestitures, License/Supply Agreement and Merger (Textual)                  
Contingent consideration valued     $ 1,800,000            
Contingent consideration was initially revalued                 $ 3,200,000
Contingent consideration accretion expenses         $ 15,000 $ 161,000